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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATCATTCCACAACTACAGGATATGGTCCTTCCTTGGTCTTGGCATGACCACCTACACTGCTTGGTATTTGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaaaaccaacaaccttaattgtttttttctctctggtggggtttctcccctttgaaattgtttcaactaaacttgcttaaaaaaaacttttttcatcaatttatag

Basic information

species Glycine max
transcript GLYMA11G35080.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35080.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0067g00330.t01 (Vitis vinifera), 5'ss of exon 5
CCCATCATTCCACAACTACAGGATATGGTCCTTCCTTGGTCTTGGCATGACCACCTACACTGCTTGGTATTTGACCATTGCAGCCATTGCTCATGGCCAGgtaagc----------------aaaaccaacaacctt---aattgtttttttctctctggtggggtttctcccctttgaaatt-----gtttcaact-aaacttgcttaaaaaaaacttttttcatcaatttatag
 || |||||||||||||||||| | ||||| || ||||||||||| |||||||| |||||||| ||||||||||||||||||||| | | ||| |||||||||  |                        ||  | |   |||  |  ||  ||   |    |  |  ||  ||||| |  ||      | |||||  |||     | |      |   |||| |    |||| ||
TCCTTCATTCCACAACTACAGGCTTTGGTCTTTTCTTGGTCTTGGTATGACCACTTACACTGCCTGGTATTTGACCATTGCAGCCCTGGTTCAAGGCCAGgtattcttcattttttctttctgggtttttcactccttacaatcatccttcactggataaacgaatcactttccttttatcttttgtaatctcaacggaaagccattgactttggatggtttttactgttttacag

upper sequence: GLYMA11G35080.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ36050 (Selaginella moellendorffii), 5'ss of exon 4
CCCATCATTCCACAACTACAGGATATGGTCCTTCCTTGGTCTTGGCATGACCACCTACACTGCTTGGTATTTGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaaaacc----aacaaccttaattgtttttt---tctctctggtggggtttctcccct---ttgaaattgt--ttcaactaaacttgcttaaaaa--aaacttttttcatcaatttatag-------------------------------------
 ||||| ||||||||||| || || ||||||||||| || ||||| ||||| || ||||| ||||||||  |||| ||  | ||  | |  |||||| |||| ||  || |     || || ||  | ||  |  |     | ||| ||     ||  |        |  |||| |  ||||  ||   | |  || |    |||||| || |||     |                                         
TCCATCGTTCCACAACTATAGAATTTGGTCCTTCCTGGGGCTTGGAATGACAACTTACACGGCTTGGTACATGACAATCACTGCTCTCGTCCATGGCAAGgtgagagaagcatctaaaaaagctccactggatgataagcttgtctcgtcaaagtttgctgtagaactagaattatctttcatttatcatgggatagattttaaacttcttacataggcgtggtctaacatcaataattctcacacttcttcacttttgcag

upper sequence: GLYMA11G35080.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ18760 (Selaginella moellendorffii), 5'ss of exon 4
CCCATCATTCCACAACTACAGGATATGGTCCTTCCTTGGTCTTGGCATGACCACCTACACTGCTTGGTATTTGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaaaaccaacaaccttaattgtttttttctctctggtggggtttctcccctttgaaattgtttca--actaaacttgcttaaaaaaaacttttttcatcaatttatag-------------------------------------------------------------------------------------
 ||||| ||||||||||| || || ||||||||||| || ||||| ||||| || ||||| ||||||||  |||| ||| | ||  | |  |||||| |||| ||  || |         |||      |   ||   || |  |  || || | |   |  ||| |  |  |||| | ||   |   |    |||||          || |                                                                                      
TCCATCGTTCCACAACTATAGAATTTGGTCCTTCCTGGGGCTTGGGATGACAACTTACACGGCTTGGTACATGACAATTACTGCTCTCGTCCATGGCAAGgtgagagaagca------tctaaaaaagctccactggatgataag-cttgtctcgtcaaagtttgctgtagaactagaattatctttcattttcttttgctgctttgctacatcatgagatgatagaggatagattttaaacttcttgtataggcgtggtctaacatgaataattctcacacttcttcacttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394045|gb|EV263916.1|EV263916
EST:     CCACCTACACTGCTTGGTATTTGACCATTGCAGCCATTGCTCATGGCCAG                         GTTGAAAATGTGAAGCATTCG
genomic: CCACCTACACTGCTTGGTATTTGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaaaa ... caatttatagGTTGAAAATGTGAAGCATTCG