Sequence
atgc intronic sequence ATGC exonic sequenceAACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTGACTCAATAAAGAAGATATTGGCATGCCAGgtatgttactgatacttgtttcaatctaacaagaagacatgaatgggaaataattgcacctgttatgcatttggcag
Basic information
species | Glycine max |
transcript | GLYMA11G29520.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G29520.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g18590.1 (Oryza sativa), 5'ss of exon 8
AACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTGACTCAATAAAGAAGATATTGGCATGCCAGgtatg----ttactgatacttgtttcaatctaa--caagaagacatgaatgggaaataatt---gcacc-tgttatgcatttggcag-----------------
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TGAGACAGAGATAAAAACACCAAGAATCCCAGTTATCTCCAATGTGGATGCATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctctacacaatattctctaaatctgaatttataatgcagctctctctactctcttgggcacaatgtcttctgtatgcctgactaattagagttacag
upper sequence: GLYMA11G29520.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G053639_T01 (Zea mays), 5'ss of exon 2
AACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTGAC----TCAA---TAAAGAAGATATTGGCATGCCAGgtatgtt---------act--gatacttgtttcaatctaacaag------aagacatgaatggga-aataattgcacctgttatgcatttggcag-------------
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-------GAAATTAGAACACCTAGAATCCCGGTCATCTCCAATGTTGATGCGCAGCCCCATTCAGATCCTGACACCATCAAGCTTCAAGCAGATTTTAGCGCAGCAGgtgagttgtatgccaaacttgaattcttactgcaggataataggcttgccacttcttgggtgaagtgatttttgactgtcgcatgcctctgacctacctgcacaacag
upper sequence: GLYMA11G29520.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g07380.t01 (Vitis vinifera), 5'ss of exon 8
AACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTGACTCAATAAAGAAGATATTGGCATGCCAGgtatgttactgatacttgtttcaatctaacaagaagacatgaatgggaaataattgcacctgtta---tgcatttggcag
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AGCTACGGAAATCAGAACTCCAAGAATCCCAGTTATATCAAACGTTGATGCACAGCCACATGCAGATCCCGACACGATTAAGAAGATATTGGCGCGTCAAgtaagatacttgaacttgtgatcttctatcaggaataaaaaatggcatgctaattcaacaaatcaactcaaaatccccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17964102|gb|BM270842.1|BM270842EST: CACAGCCACATACAGATCCTGACTCAATAAAGAAGATATTGGCATGCCAG GTTACCTCACCTGTTCAATGGGAAACAACAGTGCAGACTCTTCTAACCAAG
genomic: CACAGCCACATACAGATCCTGACTCAATAAAGAAGATATTGGCATGCCAGgtatgttact ... catttggcagGTTACCTCACCTGTTCAATGGGAAACAACAGTGCAGACTCTTCTAACCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACAACAGAAATCAGAACCCCAAGAATACCAGTCATCTCCAATGTGAATGCACAGCCACATACAGATCCTGACTCAATAAAGAAGATATTGGCATGCCAGgtatgttactgatacttgtttcaatctaacaagaagacatgaatgggaaataattgcacctgttatgcatttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG