Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGCATGTAATGACTTGATGGCATATTCGTTAATTTTGTCTTGTTGTTGCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctcatccattctttgcataaatatgacctctcatctcctcttttttggtacctagtgtttgtggatttttatatatcaattagcttttaagaa...

Basic information

species Glycine max
transcript GLYMA11G08430.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08430.2 (Glycine max), 5'ss of exon 5
lower sequence: AT2G17780.3 (Arabidopsis thaliana), 5'ss of exon 7
AGAAGCATGTAATGACTTGATGGCATATTCGTTAATTTTGTCTTGTTGTTGCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctcatccattctttgcataaatatgacctctcatctcctctttttt--ggtacctagtgtttgtggatttttatatatcaattagcttttaagaa
 ||||  |||||  || | || |  ||||| || ||  | || || |||||||||||||||||| |||||| ||||||||| ||||   ||||||| || |||       ||  |  || | | |   || |  |      ||    |||||   | |  || |  ||||  |                             
TGAAGTGTGTAAGAACCTAATCGTGTATTCTTTGATACTCTCATGCTGTTGCTATACTTGCTGCATAAGGAAGAAGCTTCGAAAGACACTGAACATAACGgtac--atcaattaaacctctactttcttaaggtcgtgatgctaaggtttttacggatgtcttgaatttgcag-----------------------------

upper sequence: GLYMA11G08430.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G35920.3 (Arabidopsis thaliana), 5'ss of exon 7
AGAAGCATGTAATGACTTGATGGCATATTCGTTAATTTTGTCTTGTTGTTGCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctcatccattctttgcataaatatgacctctcatctcc--tcttttttggtacctagtgtttgtggattttt-atatatcaattagcttttaagaa
 ||||||||||||||  | ||||| ||||| || ||  | |||||||| ||||||||||| ||||| |||||||| || |||||||   |||||||||| ||| | | |  ||  |   || ||      |||   || | |     ||   |||| | || |   | | |    ||   | | |     || | |||     
TGAAGCATGTAATGAGCTAATGGCGTATTCTTTGATACTTTCTTGTTGCTGCTATACTTGTTGCGTGAGGAGGAAACTCCGGAAGACACTGAACATCACGgtattacattctcattctcttccactcgcttgaatccttaccattaatcccatttgatcccaaaaatctatatgcttccgagaaaatttctatcatttgc---

upper sequence: GLYMA11G08430.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0349g00020.t01 (Vitis vinifera), 5'ss of exon 5
AGAAGCATGTAATGACTTGATGGCATATTCGTTAATTTTGTCTTGTTGTTGCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctcatccattctttgcataaatatgacctctcatctcctcttttttggt---acctagtgtttgtggatt----tttatatatcaattagcttttaagaa
|||||| |||||||| ||||||||||||||  | || || || ||||||||||||||||||||  | || ||||||||||| || |||||||||||||| ||||  |||| ||   |  | |||| |  |    ||   ||    | | || || |     |  |      || |||    |||  |  |  ||  |||  |     
AGAAGCCTGTAATGAATTGATGGCATATTCAATGATATTATCATGTTGTTGCTATACTTGCTGTATCAGAAGGAAGCTTCGCAACATGTTGAACATCACGgtaactcctc-tctgctgct-gcattatcagattcttatatgggatatattgtgattgagacaggaacccctgaattatgatttccacctgcatgtgctcct-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208321731|gb|GE124264.1|GE124264
EST:     ATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGAATGTTGAACATACAACA                         GGGGGCTTTATT
genomic: ATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGA-TGTTGAACAT-CA-CAgtaatgcctc ... tctatgctagGGGGGCTTTATT
EST: gi|193673391|gb|FK614732.1|FK614732
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|193633947|gb|FK581083.1|FK581083
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|193331313|gb|FK294621.1|FK294621
EST:     GCTATACTTGCTGCGTAGGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|207792314|gb|GD764220.1|GD764220
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCT
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCT
EST: gi|193341716|gb|FK305990.1|FK305990
EST:     GCTATACTTGCTGCGTAGGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|208267990|gb|GE068943.1|GE068943
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCC
EST: gi|193537282|gb|FK495367.1|FK495367
EST:     ATGTTGAACATTCTACTA                         GGGGGCTTTATTGTATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTG
genomic: ATGTTGAACA-TC-AC-Agtaatgcctc ... tctatgctagGGGGGCTTTATTG-ATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTG
EST: gi|193607388|gb|FK558261.1|FK558261
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTG
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTG
EST: gi|207688462|gb|GD672661.1|GD672661
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCT
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCT
EST: gi|207740336|gb|GD714274.1|GD714274
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGACGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|193452359|gb|FK421509.1|FK421509
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTC
EST: gi|193691407|gb|FK627536.1|FK627536
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|193497797|gb|FK462457.1|FK462457
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|208105407|gb|GD902808.1|GD902808
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTC
EST: gi|193661211|gb|FK605693.1|FK605693
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTCGAACATCACA                         GGGGGCTTTATTG
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTG
EST: gi|208275380|gb|GE078168.1|GE078168
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|193583926|gb|FK542902.1|FK542902
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|207807295|gb|GD779352.1|GD779352
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|193522257|gb|FK478210.1|FK478210
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|193632474|gb|FK583794.1|FK583794
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTCCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|193604907|gb|FK554989.1|FK554989
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: gi|207824268|gb|GD795055.1|GD795055
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGA
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGA
EST: gi|193515596|gb|FK474250.1|FK474250
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATG
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATG
EST: gi|193721085|gb|FK660327.1|FK660327
EST:     CTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTCGAACATCACGA                         GGGGGCTTTATT
genomic: CTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCAC-Agtaatgcctc ... tctatgctagGGGGGCTTTATT
EST: gi|208144680|gb|GD943061.1|GD943061
EST:     GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA                         GGGGGCTTTATTGATGATTTCC
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctc ... tctatgctagGGGGGCTTTATTGATGATTTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAGCATGTAATGACTTGATGGCATATTCGTTAATTTTGTCTTGTTGTTGCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcctcatccattctttgcataaatatgacctctcatctcctcttttttggtacctagtgtttgtggatttttatatatcaattagcttttaagaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG