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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtattttttattcaattatggatacctgatcgaattctgtcaaatctagtttggtcctgacttctatttttttctctccctcaaattaccag

Basic information

species Glycine max
transcript GLYMA10G34370.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34370.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g01750.5 (Oryza sativa), 5'ss of exon 4
TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtattttttattcaattatggatacctgatcgaattctgtcaaatctagtttggtcctgacttctatttttttctctccctcaaattaccag
| ||||| ||||| |||||  | ||||||||||| |||||||| || ||||||||||| ||||| || ||| |||||||  |      |||  |||    |||   |   |    |  |||   |      | || |  ||| | |  ||  || | |  |  | |   
TGTTGACGTATAGACATGAGCTTGGAATGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAGgttctcaaatatcatctatctcaaccaatttacagaaggaaaaa---aaaacacttcttaactctgtctgattagctgcattcatgtgcag-

upper sequence: GLYMA10G34370.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G052546_T01 (Zea mays), 5'ss of exon 5
TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtattttttattcaattatggatacctgatcgaattctgtcaaatctagtttggtcctgacttctatttttttctctccctcaaattaccag
  ||||| ||||| |||||| | || |||||||| |||||||| || |||||||||||||| ||||| ||| |||||||  |  |             || | |  |   |      || |  ||  | | |||  ||  || | |  || ||| | |  |  | |   
CGTTGACATATAGACATGAACTCGGGATGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcgc----------atccttctttaga------cagaaata--tcgctccctacccctgtctgattatctgcattcatgtgcag-

upper sequence: GLYMA10G34370.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G052546_T04 (Zea mays), 5'ss of exon 3
-----------------------TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtattttttattcaattatggatacctgatcgaattctgtcaaatctagtttggtcctgacttctatttttttctctccctcaaattaccag
                         ||||| ||||| |||||| | || |||||||| |||||||| || |||||||||||||| ||||| ||| |||||||  |  |             || | |  |   |      || |  ||  | | |||  ||  || | |  || ||| | |  |  | |   
CTTTTCCCCCCATGTTATTATAGCGTTGACATATAGACATGAACTCGGGATGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAGgtgctcgtcgc----------atccttctttaga------cagaaata--tcgctccctacccctgtctgattatctgcattcatgtgcag-

upper sequence: GLYMA10G34370.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0250g00020.t01 (Vitis vinifera), 5'ss of exon 5
TTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtattttttattcaattatggatacctgatcgaattctgtcaaatctagtttggtcctgacttctatttttttctctccctcaaattaccag
| |||||||||||||||||  |||||||||| || || ||||| |||||||||||||||||||| || |||||||||||  |     ||| | | |  |     ||     || | ||   ||||    | || |    |  |||||| | | |||  |||||  |   
TATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGgtgataccatttctactctttaattaggagaagtttttttcctttctaagaagatcat----ttgatttttgtttttcctccaaatggcag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532166|gb|EH260299.1|EH260299
EST:     TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAG                         ACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
genomic: TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttta ... aaattaccagACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
EST: gi|17022153|gb|BM093187.1|BM093187
EST:     TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAG                         ACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
genomic: TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttta ... aaattaccagACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
EST: gi|193463792|gb|FK427016.1|FK427016
EST:     TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAG                         ACTCCTGAAGATGTAGACAAGTTGTGTAGAATTGGAGTGAAAACTATATTT
genomic: TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttta ... aaattaccagACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
EST: gi|10845400|gb|BF068537.1|BF068537
EST:     TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAG                         ACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
genomic: TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttta ... aaattaccagACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
EST: gi|24205361|gb|BU964614.1|BU964614
EST:     TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAG                         ACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
genomic: TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttta ... aaattaccagACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
EST: gi|209709966|gb|BW681009.1|BW681009
EST:     TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAG                         ACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
genomic: TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttta ... aaattaccagACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
EST: gi|6916528|gb|AW398058.1|AW398058
EST:     TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAG                         ACTCCTGAAGATGTAGACAAGTTGTGTAGAATTGGAGTGAAAACTATATTT
genomic: TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttta ... aaattaccagACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
EST: gi|7589574|gb|AW705345.1|AW705345
EST:     TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAG                         ACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT
genomic: TGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGgtatttttta ... aaattaccagACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTT