1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTCAAGTGCAGCACACAACAACAAAGATCAAACTTAAGTGATTGTCTTGGTGCTGATACTCTCATCAAATTGTTGAAAAATTACTCAAGAAGTCATGAGgtagcagaactgttttggaacacaaataccccctgtaattcatgtagtttctcttctagtcttatgtgatatttgttgcttatccattaattttgttatttctgtaattgtctgtttgattttagatcattcattgaaggtcttcacatttattttgcttccttgtattgatag
species | Glycine max |
transcript | GLYMA10G24060.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGCTGATACTCTCATCAAATTGTTGAAAAATTACTCAAGAAGTCATGAG ATCAAGAAGTCGATCACTGTGGGTTTGATTGGCTTGCCCAATGTTGGTAAGEST: gi|16104768|gb|BI892508.1|BI892508
genomic: GTGCTGATACTCTCATCAAATTGTTGAAAAATTACTCAAGAAGTCATGAGgtagcagaac ... gtattgatagATCAAGAAGTCGATCACTGTGGGTTTGATTGGCTTGCCCAATGTTGGTAAG
EST: GTGCTGATACTCTCATCAAATTGTTGAAAAATTACTCAAGAAGTCATGAG ATCAAGAAGTCGATCACTGTGGGTTTGATTGGCTTGCCCAATGTTGGTAAGEST: gi|208282447|gb|GE075127.1|GE075127
genomic: GTGCTGATACTCTCATCAAATTGTTGAAAAATTACTCAAGAAGTCATGAGgtagcagaac ... gtattgatagATCAAGAAGTCGATCACTGTGGGTTTGATTGGCTTGCCCAATGTTGGTAAG
EST: GTGCTGATACTCTCATCAAATTGTTGAAAAATTACTCAAGAAGTCATGAG ATCAAGAAGTCGATCACTGTGGGTTTGATTGGCTTGCCCAATGTTGGTAAGEST: gi|193707599|gb|FK645897.1|FK645897
genomic: GTGCTGATACTCTCATCAAATTGTTGAAAAATTACTCAAGAAGTCATGAGgtagcagaac ... gtattgatagATCAAGAAGTCGATCACTGTGGGTTTGATTGGCTTGCCCAATGTTGGTAAG
EST: ACTCAAGAAGTCATGAG ATCAAGAAGTCGATCACTNTGGGTTTGATTGGCTTGCCCAATGTTGGTAAG
genomic: ACTCAAGAAGTCATGAGgtagcagaac ... gtattgatagATCAAGAAGTCGATCACTGTGGGTTTGATTGGCTTGCCCAATGTTGGTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCAAGTGCAGCACACAACAACAAAGATCAAACTTAAGTGATTGTCTTGGTGCTGATACTCTCATCAAATTGTTGAAAAATTACTCAAGAAGTCATGAGgtagcagaactgttttggaacacaaataccccctgtaattcatgtagtttctcttctagtcttatgtgatatttgttgcttatccattaattttgttatttctgtaattgtctgtttgattttagatcattcattgaaggtcttcacatttattttgcttccttgtattgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT