1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTTGTAACTGAACTCGCTAACGTTGGCCGTAAACAAGAGGCTGTGCTGGCAACTGTTTTGCCAGAGGAGCCGGGCAGTTTCAAACAGTTTTGTGAATTGgtatgtctgctactttaacactatttctatcagtgttcttcatgtttgtacttattttctatcttgtctggcag
species | Glycine max |
transcript | GLYMA10G07340.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCCGGGCAGTTTCAAACAGTTTTGTGAATTG GTGGGGCAGATGAACATCACAGAATTCAAATACAGATATAACTCCAATGAGEST: gi|298180804|gb|HO022243.1|HO022243
genomic: AGCCGGGCAGTTTCAAACAGTTTTGTGAATTGgtatgtctgc ... tgtctggcagGTGGGGCAGATGAACATCACAGAATTCAAATACAGATATAACTCCAATGAG
EST: CAACTGTTTTGCCAGAGGAGCCGGGCAGTTTCAAACAGTTTTGTGAATTG GTGGGGCAGATGAACATCACAGAATTCAAATACAGATATAACTCCAATGAGEST: gi|15814236|gb|BI786511.1|BI786511
genomic: CAACTGTTTTGCCAGAGGAGCCGGGCAGTTTCAAACAGTTTTGTGAATTGgtatgtctgc ... tgtctggcagGTGGGGCAGATGAACATCACAGAATTCAAATACAGATATAACTCCAATGAG
EST: CAACTGTTTTGCCAGAGGAGCCGGGCAGTTTCAAACAGTTTTGTGAATTG GTGGGGCAGATGAACATCACAGAATTCAAATACAGATATAACTCCAATGAGEST: gi|192314653|gb|FK008483.1|FK008483
genomic: CAACTGTTTTGCCAGAGGAGCCGGGCAGTTTCAAACAGTTTTGTGAATTGgtatgtctgc ... tgtctggcagGTGGGGCAGATGAACATCACAGAATTCAAATACAGATATAACTCCAATGAG
EST: CAACTGTTTTGCCAGAGGAGCCGGGCAGTTTCAAACAGTTTTGTGAATTG GTGGGGCAGATGAACATCACAGAATTCAAATACAGATATAACTCCAATGAG
genomic: CAACTGTTTTGCCAGAGGAGCCGGGCAGTTTCAAACAGTTTTGTGAATTGgtatgtctgc ... tgtctggcagGTGGGGCAGATGAACATCACAGAATTCAAATACAGATATAACTCCAATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGTAACTGAACTCGCTAACGTTGGCCGTAAACAAGAGGCTGTGCTGGCAACTGTTTTGCCAGAGGAGCCGGGCAGTTTCAAACAGTTTTGTGAATTGgtatgtctgctactttaacactatttctatcagtgttcttcatgtttgtacttattttctatcttgtctggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG