1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTGgtaatagttttttagttaaaactatcttgctttgttttttttattattatattatattcatctacatgggctaaaaatatattgtatcccaaatattaaaatgctttctttgttattcttttccccttag
species | Glycine max |
transcript | GLYMA10G01550.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAGGAGGGTCGGTTACAGCTG GAATGGCTATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTGEST: gi|11689956|gb|BF597632.1|BF597632
genomic: CCAGGAGGGTCGGTTACAGCTGgtaatagttt ... ttccccttagGAATGGCTATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTG
EST: CAAGGATATTGTCATGTATGTAAATTCTCCACGAGGGTCTGTTACAGCTG GAATGGCTATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTGEST: gi|31561455|gb|CD487293.1|CD487293
genomic: CAAGGATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTGgtaatagttt ... ttccccttagGAATGGCTATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTG
EST: GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTG GAATGGCTATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTGEST: gi|16279786|gb|BI943616.1|BI943616
genomic: GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTGgtaatagttt ... ttccccttagGAATGGCTATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTG
EST: GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTG GAATGGCTATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTG
genomic: GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTGgtaatagttt ... ttccccttagGAATGGCTATATTTGATACAATGAGGCATATCCGACCTGATGTGTCTACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATATTGTCATGTATGTAAATTCTCCAGGAGGGTCGGTTACAGCTGgtaatagttttttagttaaaactatcttgctttgttttttttattattatattatattcatctacatgggctaaaaatatattgtatcccaaatattaaaatgctttctttgttattcttttccccttag
- - - - - - - - - - - - - - - - - - - - CAGCTG