1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTCATCTAGAACCATATCGCTGCTTGTTTAAAGATGGTTCTGTAAAAAATGTAGTCCCAGACCCAGATGTTCCCCCAAGTTGTGATGCAGACTCACTAGAgtatggccccatgcagtggattgacaaattaatatagctttttattaaattttactttgttttttccgtcccttcaatggtttcctatagctaatttagagtatcaattcaaagttcagatgctctaaattattataacgacccatttatag
species | Glycine max |
transcript | GLYMA10G00610.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTAGTCCCAGACCCAGATGTTCCCCCAAGTTGTGATGCAGACTCACTAGA GTTTGATCTGCGACCTGEST: gi|8403273|gb|BE058907.1|BE058907
genomic: GTAGTCCCAGACCCAGATGTTCCCCCAAGTTGTGATGCAGACTCACTAGAgtatggcccc ... ccatttatagGTTTGATCTGCGACCTG
EST: CAGATGTTCCCCCAAGTTGTGATGCAGACTCACTAGA GTTTGATCTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGAEST: gi|21887209|gb|BQ740422.1|BQ740422
genomic: CAGATGTTCCCCCAAGTTGTGATGCAGACTCACTAGAgtatggcccc ... ccatttatagGTTTGATCTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGA
EST: CCCAAGTTGTGATGCAGACTCACTAGA GTTTGATCTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGAEST: gi|192294686|gb|FG986535.1|FG986535
genomic: CCCAAGTTGTGATGCAGACTCACTAGAgtatggcccc ... ccatttatagGTTTGATCTGCGACCTGGAACAAAACCTAAACATGGTGCCGGAGATAAAGA
EST: GTAGTCCCAGACCCAGATGTTCCCCCAAGTTGTGATGCAGACTCACTAGA GTTTGATCTGCGAC
genomic: GTAGTCCCAGACCCAGATGTTCCCCCAAGTTGTGATGCAGACTCACTAGAgtatggcccc ... ccatttatagGTTTGATCTGCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCATCTAGAACCATATCGCTGCTTGTTTAAAGATGGTTCTGTAAAAAATGTAGTCCCAGACCCAGATGTTCCCCCAAGTTGTGATGCAGACTCACTAGAgtatggccccatgcagtggattgacaaattaatatagctttttattaaattttactttgttttttccgtcccttcaatggtttcctatagctaatttagagtatcaattcaaagttcagatgctctaaattattataacgacccatttatag
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