Sequence
atgc intronic sequence ATGC exonic sequenceAATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGGATACTTATCATGGAGATAATCACCGGAAGAAGTCCTGTTGATTATAGTAGACCGCAAGGAGAGgttagaggccctcaccaataaaagaccatagttaacatttatgctatcttctctcttttttgggctaactatgcatgttggaacaattacag
Basic information
species | Glycine max |
transcript | GLYMA09G39160.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G39160.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G01330.1 (Arabidopsis thaliana), 5'ss of exon 5
AATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGGATACTTATCATGGAGATAATCACCGGAAGAAGTCCTGTTGATTATAGTAGACCGCAAGGAGAGgttagaggccctcaccaataaaagaccatagttaacatttatgctatcttctctcttttttgggctaactatgcatgttggaacaattacag
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AATGTTGACAGAAAAGAGTGATATCTATAGTTTTGGGATATTAATCATGGAGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAGgtaatttgtt-ttatatctatcgcttcaaggtt--tcacaaaaccgtgttcttgattgtctcgttttgttag--------------------
upper sequence: GLYMA09G39160.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G01540.2 (Arabidopsis thaliana), 5'ss of exon 5
AATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGGATACTTATCATGGAGATAATCACCGGAAGAAGTCCTGTTGATTATAGTAGACCGCAAGGAGAGgttagaggccctcaccaataaaagaccatagttaacatttatgctatcttctctcttttttgggctaactatgcatgttggaacaattacag
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AATGTTAAACGAGAAGAGTGATATCTATAGCTTCGGAATACTAATCATGGAGATAATCACTGGAAGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGAGgt--------------atttgataagcatattcaatcct----ctctatgtttttgtaaatggtcttactatg--tgtcgtggctgtag---
upper sequence: GLYMA09G39160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 5
AATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGGATACTTATCATGGAGATAATCACCGGAAGAAGTCCTGTTGATTATAGTAGACCGCAAGGAGAGgttag--------aggccctcaccaataaaagaccatagttaacatttatgctatcttctctcttttttgggct---aactatgcatgttgga--acaattacag
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TATGCTGAATGAAAAAAGCGATGTTTATAGCTTTGGAATTCTTATTATGGAGATAATTTCAGGCAGAAATCCTGTTGATTATAGCCAAGCACCTGGAGAGgttaatctcttgaaagctttttggaaaacatttctttatattcctcttggattagggtcatcatctttctaactgtaaactggaattactgaatgataattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213589430|gb|DB978051.1|DB978051EST: TGATAATCACCGGAAGAAGTCCTGTTGATTATAGTAGACCGCAAGGAGAG GTTAATTTAATAGAATGGTTGAAGACTATGGTTGGGAATCGAAAATCCGAG
genomic: AGATAATCACCGGAAGAAGTCCTGTTGATTATAGTAGACCGCAAGGAGAGgttagaggcc ... acaattacagGTTAATTTAATAGAATGGTTGAAGACTATGGTTGGGAATCGAAAATCCGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGGATACTTATCATGGAGATAATCACCGGAAGAAGTCCTGTTGATTATAGTAGACCGCAAGGAGAGgttagaggccctcaccaataaaagaccatagttaacatttatgctatcttctctcttttttgggctaactatgcatgttggaacaattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA