Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTgtaagatgcaagcttaactttgcctttgaaacttaagttcctttttgacatcattgtttaaagggtgatatacttgattgattaaattcattttagtcttctaagattcttttattttttttttgtttctgacctggataattgttcag

Basic information

species Glycine max
transcript GLYMA09G38730.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38730.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g46740.1 (Oryza sativa), 5'ss of exon 6
GTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTgtaagatgcaagcttaactttgcctttgaaacttaagttcctttttgacatcattgtttaaagggtgatatacttgattgattaaattcattttagtcttctaagattcttttattttttttttgtttctgacctggataattgttcag
|| || |||||||||||  | ||||||||| | || ||||||||||||||||| || || ||||||||  |||        || ||||  |    |||||   ||                  || ||  |  |  |  |||  |  | | || |  || | ||  | | ||||   |||                               
GTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTTgtaaga-acaa--------ttaccttcca----taagtctatt-----------------gagagtagtcaatctacttgtatttactaatctcggtttcctctg-tcctttggctttag-----------------------------

upper sequence: GLYMA09G38730.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G889923_T02 (Zea mays), 5'ss of exon 3
GTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTgtaagatgcaagcttaactttgcctttgaaacttaagttcctttttgacatcattgtttaaagggtgatatacttgattgattaaattcattttagtcttctaagattcttttattttttttttgtttctgacctggataattgttcag
|| || |||||||| ||||| ||||||||| | || ||||||||||||||||| || || |||||||           |   |||||   | |    || || |||||    | |||| ||       | | |  |   |  | ||  | |||  |   |||                                                 
GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagg---------gaacatgcctgccaga----aggtcattttttcagtaattgcttctgttcagctttcatc--tctaatacctccatcctttgctttag----------------------------------------------

upper sequence: GLYMA09G38730.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G868168_T04 (Zea mays), 5'ss of exon 6
GTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTgtaagatgcaagcttaactttgcctttgaaacttaagttcctttttgacatcattgtttaaagggtgatatacttgattgattaaattcattttagtcttctaagattcttttattttttttttgtttctgacctggataattgttcag
|| || |||||||| ||||| ||||||||| | || ||||||||||||||||| || || |||||||           |   |||||   | |   | ||   ||||    |  |||| ||   |       | | |  ||||| | || |||  |   |||                                                 
GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTTgtaagg---------gaacatgcctgccaga---aggtcatttttcagta--attgcttct-gttcagctttcatctttgat-acatccatcctttgctttag----------------------------------------------

upper sequence: GLYMA09G38730.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTgtaagatgcaagcttaactttgcctttgaaacttaagttcctttttgacatcattgtttaaagggtgatatacttgattgattaaattcattttagtcttctaagattcttttattttttttttgtttctgacctggataattgttcag
|| || || |||||||| |||||||||||  |  | |||||||||||||||||||||||  |||||||||  |   |       |||    ||| | | |||    |  | | ||||| |   | | |  |    ||  |   | | ||| |||  | | ||||  | |   |  ||                                  
GTATTTCAGAGTGCAGCTCTCTTTGATTCACTATCAGTTCGTGAAAATGTTGGTTTTCTACTgtaagatgttattctttaacgtcctacataacctcatttctagct--aaaacattgct--gatgttctttcgttt--tcagtcatattgattaaacttttctgtggtaacta-atcacag-----------------------------

upper sequence: GLYMA09G38730.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g00290.t01 (Vitis vinifera), 5'ss of exon 5
GTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTgtaagatgcaagcttaactttgcctttgaaacttaagttcctttttgacatcattgtttaaagggtgatatacttgattgattaaattcattttagtcttctaagattcttttattttttttttgtttctgacctggat-aattgttcag
|| || || ||||| ||||| ||||||||||| ||||||||||||||||||||||| || ||||||||  ||  ||  | |||  ||||  || || | |   ||| ||   || | ||     |||   ||   ||||    |   | |  ||||| | ||| | | |||| ||    |  |     | |  |  |   | ||||  | ||
GTCTTTCAGAGTGCTGCACTTTTTGATTCTTTAACTGTTCGTGAAAATGTTGGTTTCCTTTTgtaagagacagtct--agtttatctttacaaatttaatgtttttatgttgtcttggt-----ggggcttaattttgacctttattagtttttttactattc-atgcttctcttgacctcctaacactgcctattttcttgaattacttag