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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTgtacgtctttatctcaagtttctgttaagtattgcaaataaaattattagatttgatatgcttttcatacttaattttgatttctattaatgacatttatttttcag

Basic information

species Glycine max
transcript GLYMA09G34860.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os11g48090.3 (Oryza sativa), 5'ss of exon 6
ACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTgtacgtctttatctcaagtttctgttaagtattgcaaataaaattattagatttgatatgcttttcatacttaattttgatttctattaatgacatttatttttcag
||| ||||||||||||||||| ||||| ||||| || ||||||||||  ||  | ||| | |||   ||||| ||  ||||||||||  | ||||| |||||  ||    |    || | ||  ||   ||    || |||| ||  ||  | | || ||   |     ||   | ||  |||  |                     
ACACTGCTGTAGTCAATGGGGCCATGATTTTCGCCCAGACTACAAGAATCTTGGCATTTTAAAGGTCCAGTTTCCCAGTGTTCCTATGATAGCTTTAACTgtgagttgcgaaaataa-tatccattttttacaataattaaattt--taactgtaatgtgaaataaggcctgcttctttttttgcag--------------------

upper sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G451856_T02 (Zea mays), 5'ss of exon 6
ACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTgtacgtctttatctcaagtttctgttaagtattgcaaataaaattattagatttgatatgcttttcatacttaattttgatttctattaatgacatt-tatttttcag
 || |||||||| |||||||||||||| ||||| |||||||||||||  ||  | ||| | || |  || || ||  ||||||| ||  | ||||| |||||| ||         ||      || ||  | | |||||||    |||  |||| | | |    |  | | | |  |  |   |  || |    ||  |||||| |||
TCACTGCTGTAGCCAATGGGGTCATGATTTTCGTCCTGACTACAAGAATCTTGGCATTTTGAAAATTCAATTTCCCAGTGTTCCAATGATAGCTTTAACTgtaagt---------aaa-----gtaaaaaagttcaaataa---cattcaattttagaagtaaattgtgcgtgaactccag--cagttgagcctataatattttgcag

upper sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G31360.1 (Arabidopsis thaliana), 5'ss of exon 5
ACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTgtacgtctttatctcaagtttctgttaagtattgcaaa--taaaattattagatttgatatgcttttcatacttaattttgatttctattaatgacatttatttttcag
 ||||| |||||||| ||||||||||| ||||| ||||| ||||||| | | || ||||| || || ||||| ||    ||||| || || ||||| |||||| || ||| | |  | ||| ||  |     ||  |   |||| |    ||   |     ||||     || | | | || ||   || |    || ||         
TCATTGTTGTAGTCAGTGGGGTCATGATTTTCGCCCTGATTACAAGAACTTAAGCATTCTGAAAACCCAGTTTCCCAAAGTTCCCATGGTGGCTTTAACTgtatgtttttgttttca-tttatgggataccctgtgagcttaaattagacagcactagggagcttgcttcaccttactgtgcttatcataaggaccaattt--------

upper sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 5
ACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTgtacgtctttatctcaagtttctgttaagtattgcaaataaaattattag-atttgatatgcttttcatacttaattttgatttctattaatgacatttatttttcag
||||||||||||||| ||||| ||||||||||| || || ||||| |  ||  | ||  | ||||| ||||| |||  ||||||  | ||||||||||||||| |||   || | |  ||| | |    |  | |   |  | |  ||   ||    ||    ||| ||   || ||     |||| |  ||   ||  ||||  |||
ACATTGCTGTAGTCAGTGGGGCCATGACTTTCGCCCAGATTACAAAAATCTTGGCATCTTAAAGACTCAGTTTCCTGATGTTCCAGTAGTTGCTTTGACTgtatgtc---atgttatatttttctctttttcttctttttcactctttgtcatgctctacaactttgatgactagttaaagattct-tacattttatgcatttcccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16276851|gb|BI942077.1|BI942077
EST:     TCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACT                         GCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCATATT
genomic: TCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTgtacgtcttt ... tatttttcagGCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCATATT