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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTGATGAAGCTGATCGGATGCTTGATATGGGTTTTGAACAAATAGTTCGTTCTATACTGGGTCAGACATGTTCTGgtatgatgcatttttcttcaactgtttccactattactggtcattaacttattccacttaatttcttgttatagttttttttaaatgttggcttaaattt...

Basic information

species Glycine max
transcript GLYMA09G34390.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34390.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g20580.1 (Oryza sativa), 5'ss of exon 5
GTACTTGATGAAGCTGATCGGATGCTTGATATGGGTTTTGAACAAATAGTTCGTTCTATACTGGGTCAGACATGTTCTGgtatgatgcatttttcttcaactgtttccactattactggtcattaacttattccacttaatttcttgttatagttttttttaaatgttggcttaaattt---
|| || |||||||||||||| ||||| ||||||||||||||||    |||  |  | ||  |  | || ||    |||||| ||   |  ||    ||   |  || ||       ||    |  |  |   ||  |  ||  | ||| ||  ||||  ||  ||      |||  |     
GTTCTAGATGAAGCTGATCGAATGCTGGATATGGGTTTTGAACCTGAAGTCAGAGCAATTTTAAGCCAAACTGCATCTGgtttgtctccattactctc--ttcctttcagggcatgtgtatgtgcatgtccacctttgcatcgcatgt-attcttttcctttcatccctttttatctggttg