Sequence
atgc intronic sequence ATGC exonic sequenceCAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtattttttataaactatgctttcttgaagttatcatgctgaatgattagctcatcaactactcttgcctcaaatttatacag
Basic information
species | Glycine max |
transcript | GLYMA09G34170.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G35530.1 (Arabidopsis thaliana), 5'ss of exon 5
CAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtatttttta-taaactatgctttcttgaagttatcatgctgaatgattagctcatcaactac-tcttgcctcaaatttatacag------
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CATATGATGCCTCCTTATGGAACTCCGCCTCATCCTTATGTTGCAATGTATCCCCCAGGTGGCATGTACGCACATCCTTCAATGCCTCCGgtactgccaactgtagtagattcaattgcagtgaacataaattaaaatgtagctgttaattatatctttaatatgttccattctgtatcag
upper sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 5
CAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtatttt-ttataaactatgctttc-ttgaagttatcatgctga-atgattagctcatcaactac-tcttgcc-tcaaatttatacag------------------
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CATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGgtattttcttttggagcatgctttagtttcagttataatattgtcatcgtgtacttgctttctgcattccgctatctaaaatgctcaatgttttattttttaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6482300|gb|AW201569.1|AW201569EST: TTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCG GGATCTTATCCTTTTAATCCTTTTGCCATGCCTTCTCCTAATGGCATTGCT
genomic: TTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtatttttta ... atttatacagGGATCTTATCCTTTTAATCCTTTTGCCATGCCTTCTCCTAATGGCATTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtattttttataaactatgctttcttgaagttatcatgctgaatgattagctcatcaactactcttgcctcaaatttatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG