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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTAGTTTTACTCAACAAATTTTGTCAGGACTTGCTTATTTACATGCTAAAAATACTGTCCACAGgtaaacagagtcacttgttcatttttaaaaccttaaattttactgctgcctcataatgattaattttttatactccagagtcctgatatatatctatcacttacattgcatttcttgtaaag

Basic information

species Glycine max
transcript GLYMA09G24970.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24970.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 5
TTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTAGTTTTACTCAACAAATTTTGTCAGGACTTGCTTATTTACATGCTAAAAATACTGTCCACAGgtaaacagagtcacttgttcat--ttttaaaaccttaaattttactgctgcctcataatgatta----attttttatactccagagtcctgatatatatctatcacttacattgcatttcttgtaaag
||||||||||||| ||| ||||||||||||| |||||||| | ||| |||||||| |||||||| || || ||||| |||||||||||||||||||| |||| ||   ||| ||   ||  |  |   | || || || | |  |||||   |  | ||  ||     ||||  | || | || |    || |     | | || |  | |    ||||| |||| ||
TTCAAGAATATGGCCAACTTGGTGAACTAGCAATTCGTAGCTATACCCAACAAATCTTGTCAGGGCTCGCCTATTTGCATGCTAAAAATACTGTCCATAGgtgaatcaagttaccaattgttgatccaacaatctgaagtgtagctgctttttattgatttttctattatttgctttatttca-aactttgttcaccttttttctcacaaaccatatttcctgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5753494|gb|AI960781.1|AI960781
EST:     CAAATTTTGTCAGGACTTGCTTATTTACATGCTAAAAATACTGTCCACAG                         GGACATCAAAGGAGCAAATATACTGGTAGATACTAATGGCCGGGTTAAGTT
genomic: CAAATTTTGTCAGGACTTGCTTATTTACATGCTAAAAATACTGTCCACAGgtaaacagag ... tcttgtaaagGGACATCAAAGGAGCAAATATACTGGTAGATACTAATGGCCGGGTTAAGTT