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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAATGCAATGTGGGATATGCATTCATCAACATGATCAATCCTGGCTTGATTATACCATTCTATCAGgtctgctatggaaaatgatgatgacaatcaaaatgattgctgttaaacttataatcacataacattcacacacacacacacataccctgtactaatagactgaagcttatgatgcaattctggcag

Basic information

species Glycine max
transcript GLYMA08G28860.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G28860.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G451716_T01 (Zea mays), 5'ss of exon 13
AACAAATGCAATGTGGGATATGCATTCATCAACATGATCAATCCTGGCTTGATTATACCATTCTATCAGgtctgctatggaaaatgatgatgacaatcaaaatgattgctgttaaacttataatcacataacattcacacac-acacacacataccctgtactaatagactgaagcttatgatgcaattctggcag
|| || |||||||| || |||||||||||||||||||||||||||| |   ||| | ||||| ||| ||||  | |    |||   |     | || || |   |    ||   | ||     |  |||   ||| | | |  | || | |  |   |||  | | |                             
AATAAGTGCAATGTTGGTTATGCATTCATCAACATGATCAATCCTGACAATATTGTTCCATTTTATAAGgtgagattctaaaacatacttaaaaaaacagacgaacctatgaggagctag--gtagcattttattaagaaattaaactccccaaatttgtcttgacaagga-------------------------

upper sequence: GLYMA08G28860.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ28200 (Selaginella moellendorffii), 5'ss of exon 10
AACAAATGCAATGTGGGATATGCATTCATCAACATGATCAATCCTGGCTTGATTATACCATTCTATCAGgtctgctatggaaaatgatgatgacaatcaaaatgattgctgttaaacttataatcacataacattcacacacacacacacataccctgtactaatagactgaagcttatgatgcaattctggcag
||||||||||| || || ||||||||||||||||||| | | || |     ||  | || || ||  ||||  | |        |           |   |||  ||| || |     | | |                                                                        
AACAAATGCAACGTTGGCTATGCATTCATCAACATGACCGAGCCAGCTCACATCGTCCCCTTTTACAAGgttcgatcaattctctcgctcctctggttgtaatccttgttggtggctctgtgactttcag-----------------------------------------------------------------