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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATGTCATTTATACACACAAAAACATTATTGTTAAATACAACAATGATCAGgttagaagttatttaaatatcttatgctatcttaagacaggttatggatccttcaagtttcatattaaggtttgtttccttgcag

Basic information

species Glycine max
transcript GLYMA08G13370.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 5
GATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATGTCATTTATACACACAAAAACATTATTGTTAAATACAACAATGATCAGgttagaagttatttaaatatcttatgctatcttaagacaggttatggatccttcaagtttcatattaaggtttgtttccttgcag
| | ||| |||||| | |||||||| || || ||||| || |||||||||||  |||| ||||| || |||||| |||| ||||||||||| || |||||  |  ||||       |  ||| || ||  || |  |  | |||    || ||  | | || ||| | | | | |  |   ||
GCTTTGTGGGTGAGCTGCATCCTGACAAAAATAGTGAAAACGGCAAGCATGTTCTTTACACACATAAGAACATTGTTGTCAAATACAACAAAGACCAGgtcggttgttaccacgcca--ttaagcaatagtatgg-atatcatgtgaactacatctgtgatcttatg-tatctattttaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18690803|gb|BM519651.1|BM519651
EST:     ATGTCATTTATACACACAAAAACATTATTGTTAAATACAACAATGATCAG                         ATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGGAGTGGGA
genomic: ATGTCATTTATACACACAAAAACATTATTGTTAAATACAACAATGATCAGgttagaagtt ... ttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTGGGA
EST: gi|207795135|gb|GD765390.1|GD765390
EST:     ATGTCATTTATACACACAAAAACATTATTGTTAAATACAACAATGATCAG                         ATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTGGGA
genomic: ATGTCATTTATACACACAAAAACATTATTGTTAAATACAACAATGATCAGgttagaagtt ... ttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTGGGA