Sequence
atgc intronic sequence ATGC exonic sequenceCTGCCGAAGATGCTCTAAATCATGAGTGGTTCCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtaatttgacctaattggaaatgctggagcaatttttataagaatttttttttgtttatgttctctagtctggataaaagagggaagttgtgtaaaatatttgctgagtctatactatataacatttatcaacttttatttttgacaagttttcataatttcatcatataaatag
Basic information
species | Glycine max |
transcript | GLYMA08G10810.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G10810.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g41100.6 (Oryza sativa), 5'ss of exon 7
CTGCCGAAGATGCTCTAAATCATGAGTGGTTCCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtaatttgacctaa---ttggaaatgctggagcaatttttataagaatttttttttgtttatgttctctagtctggataaaagagggaagttgtgtaaaatatttgctgagtctatactatataacatttatcaacttttatttttgacaagttttcataatttcatcatataaatag
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CAGCAGATGCTGCTTTGCAGCATGAGTGGTTCCGTGAAGTTCCTCTACCTAAATCAAAGGATTTCATGCCAACATTCCCTGCTCTAAATGAATTAGACAGgtacttcttcgcaaccatttaatctacttgtagtgttgcttaaatatctttgtttcatgtagtgaaatttattttcctaaaattccacag----------------------------------------------------------------------------------------
upper sequence: GLYMA08G10810.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G115755_T01 (Zea mays), 5'ss of exon 6
CTGCCGAAGATGCTCTAAATCATGAGTGGTTCCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtaatttgacctaattggaaatgctggagcaatttttataagaatttttttttgtttatgttctctagtctggataaaagagggaagttgtgtaaaatatttgctgagtctatactatataacatttatcaacttttatttttgacaagttttcataatttcatcatataaatag
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CTGCTGCTGATGCCTTGAACCATGAGTGGTTCCGTGAAGTTCCTCTGCCCAAGATGAAGGAATTCATGCCAACTTTTCCTGCTCTGAATGAACAGGACAGgtaat-------------agttactgtattatttgatttccaaactcgaaat-gactaaattgaat-gttttattaatatatgg---ctgtatattacatt-attggacctacag------------------------------------------------------------
upper sequence: GLYMA08G10810.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G67580.2 (Arabidopsis thaliana), 5'ss of exon 5
CTGCCGAAGATGCTCTAAATCATGAGTGGTTCCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtaatttgacctaattggaaatgctggagcaatttttataagaatttttttttgt---ttatgttctctagtctggataaaagagggaagttgtgtaaaatatttgctgagtctatactatataacatttatcaacttttatttttgacaagttttcataatttcatcatataaatag
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CTGTTAATGAAGCTCTAAAGCATGATTGGTTCCGCGAAGTCCCTCTGCCAAAATCCAAAGATTTCATGCCTACTTTTCCTGCTCAACATGCCCAAGACAGgtactgaggtctatctaaa----ctgaaacgatcagtggttgactttaattctgtctcttactttttcttctatgcctag--------------------------------------------------------------------------------------------------
upper sequence: GLYMA08G10810.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 5
CTGCCGAAGATGCTCTAAATCATGAGTGGTTCCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtaatttgacctaattggaaatgctggagcaatttttataagaatttttttttgtttatgttctctagtctggataaaagagggaagttgtgtaaaatatttgctgagtctatactatataacatttatcaacttttatttttgacaagttttcataatttcatcatataaatag
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CAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCTCTTCCCAAATCTAAAGATTTCATGCCTACTTTTCCTGCTCAGCATGCCCAGGACAGgtatcttgaccctatacatgactttaaatgagagatgagtaggagtgcagtt--tttattttttatag-caatttctaaaataaattttgttcatttgattatcag---------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213601919|gb|DB976194.1|DB976194EST: TGCTCAACATGCTCAGGACAG GCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGTCG
genomic: TGCTCAACATGCTCAGGACAGgtaatttgac ... atataaatagGCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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CTGCCGAAGATGCTCTAAATCATGAGTGGTTCCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtaatttgacctaattggaaatgctggagcaatttttataagaatttttttttgtttatgttctctagtctggataaaagagggaagttgtgtaaaatatttgctgagtctatactatataacatttatcaacttttatttttgacaagttttcataatttcatcatataaatag
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