Sequence
atgc intronic sequence ATGC exonic sequenceTAATAAGGACGTTAAAGTAACTGCCACATGCATACGAGTTCCTGTCATGCGAGCTCATGCTGAGAGTGTGAATCTTCAATTTGAAACACCCCTTGATGAGgtacttcatgctggcatgctgtgtctttatgccattgccaaaactcatagttgacattgctttacgtcccaaaactgaatacagaattttaacctagacc...
Basic information
species | Glycine max |
transcript | GLYMA08G05250.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G05250.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g55280.1 (Oryza sativa), 5'ss of exon 5
TAATAAGGACGTTAAAGTAACTGCCACATGCATACGAGTTCCTGTCATGCGAGCTCATGCTGAGAGTGTGAATCTTCAATTTGAAACACCCCTTGATGAGgt----acttcatgctggcatgctgtgtctttatgccattgccaaaactcatagttgacattgctttacgtcccaaaactgaatacagaattttaacctagacc
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TGATAAAGATGTGAAGGTAACTGCAACCTGCATACGAGTTCCTGTGATGCGTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGgttagcataaaatatttcttaatgataaattctggttagcatgaagaatcctttctgcttgtggtaatcctatacccttcttttgttaggtattaatatg----
upper sequence: GLYMA08G05250.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G076885_T01 (Zea mays), 5'ss of exon 5
TAATAAGGACGTTAAAGTAACTGCCACATGCATACGAGTTCCTGTCATGCGAGCTCATGCTGAGAGTGTGAATCTTCAATTTGAAACACCCCTTGATGAGgtacttcatgctggcatgctgtgtctttatgccattgccaaaactcatagttgacattgctttacgtcccaaaactgaatacagaat--tttaacctagacc---
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TGACAAGGAGGTGAAAGTAACTGCGACTTGCATACGGGTTCCTGTGATGCGCGCACATGCTGAAAGTGTCAATCTACAGTTTGAAAAGCCACTTGATGAGgttggt-attctg-catattatgtgctaa--ctagcattagagcttttctgt-acgtgcgaatatgtttctttccttcatactatcctcttttgtctctattagt
upper sequence: GLYMA08G05250.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G14810.1 (Arabidopsis thaliana), 5'ss of exon 5
TAATAAGGACGTTAAAGTAACTGCCACATGCATACGAGTTCCTGTCATGCGAGCTCATGCTGAGAGTGTGAATCTTCAATTTGAAACACCCCTTGATGAGgtact--------tcatgctggcatgctg-tgtctttatgccattgccaaaactcatagttgacattgctttacgtcccaaaactgaatacagaattttaacctagacc
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TGACACAGAAGTAAAAGTAACAGCAACGTGTATACGTGTTCCAGTTATGCGTGCTCATGCAGAGAGTGTGAATCTTCAGTTTGAGAATCCTCTTGATGAGgtaataacacacgtcgaacccgatttctactgattctgtgttgttgtgttaccttatgattt-cactcactgatatgacaat-ttgaat-cataatttgaagt------
upper sequence: GLYMA08G05250.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g05860.t01 (Vitis vinifera), 5'ss of exon 5
TAATAAGGACGTTAAAGTAACTGCCACATGCATACGAGTTCCTGTCATGCGAGCTCATGCTGAGAGTGTGAATCTTCAATTTGAAACACCCCTTGATGAGgtacttcatgctggcatgctgtgtctt-tatgccattgccaaaactcatagttgacattgctttacgtcc--caaaactgaatacagaattttaacctagacc---
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TGACATGAATGTTAAAGTGACTGCCACATGCATACGGGTCCCTGTTATGCGTGCGCATGCTGAGAGTGTTAATCTCCAGTTTGAGAATCCCCTTGATGAGgtac--aatgatg--atgctataaaagatatattgcttataaaacttggtgcacaattagatgttggtctattgatattcataaaagaatttt--tttagcacaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254332378|gb|GR846423.1|GR846423EST: GAGCTCATGCTGAGAGTGTGAATCTTCAATTTGAAACACCCCTTGATGAG GACACTGCAAGAGATATTCTGAAGAATGCTCCAGGTGTAGTGGTTATTGAT
genomic: GAGCTCATGCTGAGAGTGTGAATCTTCAATTTGAAACACCCCTTGATGAGgtacttcatg ... atttcttcagGACACTGCAAGAGATATTCTGAAGAATGCTCCAGGTGTAGTGGTTATTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAATAAGGACGTTAAAGTAACTGCCACATGCATACGAGTTCCTGTCATGCGAGCTCATGCTGAGAGTGTGAATCTTCAATTTGAAACACCCCTTGATGAGgtacttcatgctggcatgctgtgtctttatgccattgccaaaactcatagttgacattgctttacgtcccaaaactgaatacagaattttaacctagacc
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG