Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTGGCTTTCACATCTGATACTGTGGCTGAGAAGATGTTGACCAAGGATATTTTAAAATCATTGAAAAACTTATGTGCCCATAAAGATCCAGAGGCAAgttagtttcttcatagatagtgactaaattggttccttatattgcagtcctttgaattttaggtttatccttctataggtacaaaggctag

Basic information

species Glycine max
transcript GLYMA07G38890.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0116g00830.t01 (Vitis vinifera), 5'ss of exon 6
-------------------------------------------------CAGTTGGCTTTCACATCTGATACTGTGGCTGAGAAGATGTTGACCAAGGATATTTTAAAATCATTGAAAAACTTATGTGCCCATAAAGATCCAGAGGCAAgttagtttcttcatagat---agtgactaaattggttcctt---------atattgcagtcctttgaattttaggtttatccttctataggtacaaaggctag
                                                  | ||||||||  |||||||||  || ||| |||||||||||||||||||| | || ||||||||||||   || |||||||||||| ||||||||||||||| | |||||| | | |   | | ||| ||||  ||  ||         ||||    ||  |   |  || | | || || |||   ||             
GAAATCTGTCGCTCCAGAAGAACTAATTTCTGTATTGCAAGTTGTAGTCAACTTGGCTTTTGCATCTGATATGGTAGCTCAGAAGATGTTGACCAAGGATgtattgaaatcattgaaattgttgtgtgcccataaaaatccagaggcaagtttgcttcttccttgttctaatttactgaattcattgtttccccttttgatatcatggttatacaagattgaaggttttctttcatcag-------------