1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGgtatgcctccaataagtaatttgatgctagaatgtataaccatagaaagaagaggaactctatggccttgttgtatgcttgtttgtttgaccttcattttatcattgcag
species | Glycine max |
transcript | GLYMA07G05220.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGG GGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGAEST: gi|298168532|gb|HO009462.1|HO009462
genomic: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGgtatgcctcc ... atcattgcagGGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGA
EST: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGG GGTTGATAGAAATAAATATCAGATTCAGATTCCTTEST: gi|192302201|gb|FG997281.1|FG997281
genomic: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGgtatgcctcc ... atcattgcagGGTTGATAGAAATAAATATCAGATTCAGATTCCTT
EST: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGG GGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTTCAAAAATTGAEST: gi|208236095|gb|GE030659.1|GE030659
genomic: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGgtatgcctcc ... atcattgcagGGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGA
EST: C-AGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGG GGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCTTCCAAAAATTGAEST: gi|193512879|gb|FK468649.1|FK468649
genomic: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGgtatgcctcc ... atcattgcagGGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGA
EST: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTAG GGTTGATAGAAGTAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGAEST: gi|16346898|gb|BI972493.1|BI972493
genomic: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGgtatgcctcc ... atcattgcagGGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGA
EST: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGG GGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGAEST: gi|209711453|gb|BW665205.1|BW665205
genomic: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGgtatgcctcc ... atcattgcagGGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGA
EST: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGG GGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGAEST: gi|193407658|gb|FK374476.1|FK374476
genomic: CTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGgtatgcctcc ... atcattgcagGGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGA
EST: GGATGCGTGTTGG GGTTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTG
genomic: GGATGCGTGTTGGgtatgcctcc ... atcattgcagGG-TTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGgtatgcctccaataagtaatttgatgctagaatgtataaccatagaaagaagaggaactctatggccttgttgtatgcttgtttgtttgaccttcattttatcattgcag
- - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - AGAGGA