1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttttgtctctacatttcttttaagatacggttaataaattctactgaagtttttattcaggatgccacaatgtactcccataaaatagttact...
species | Glycine max |
transcript | GLYMA07G00490.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA TGTGTCTGCACATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGEST: gi|298188098|gb|HO032055.1|HO032055
genomic: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttt ... atttttgcagTGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAG
EST: AGCTGCAAACAACAGTACGTCTAGCACAGATGCCCCAACTACAAA TGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGEST: gi|213614987|gb|DB957039.1|DB957039
genomic: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttt ... atttttgcagTGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAG
EST: AGCTGCAAACAACAGTACATCTAGAACAGATGCCCCAACTACAAA TGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGEST: gi|298164323|gb|HO013968.1|HO013968
genomic: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttt ... atttttgcagTGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAG
EST: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA TGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGEST: gi|213592873|gb|DB969839.1|DB969839
genomic: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttt ... atttttgcagTGTGTCTGCAGATACCTATGGTCTGGCTGCTTCG
EST: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA TGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAAEST: gi|27427422|gb|CA938942.1|CA938942
genomic: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttt ... atttttgcagTGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAA
EST: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA TGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGEST: gi|23727295|gb|BU761676.1|BU761676
genomic: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttt ... atttttgcagTGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAG
EST: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA TGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGEST: gi|298172529|gb|HO019569.1|HO019569
genomic: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttt ... atttttgcagTGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAG
EST: AGCTGCAAACAACGGTACATCTAGCACAGATGCCCCAACTACAAA TGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGEST: gi|33387852|gb|CA851059.1|CA851059
genomic: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttt ... atttttgcagTGTGTCTGCAGATACCTATGGTCTGGCTGCTTCG
EST: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA TGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGEST: gi|15200810|gb|BI424534.1|BI424534
genomic: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttt ... atttttgcagTGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAG
EST: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACCAA TGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGEST: gi|15338030|gb|BI498686.1|BI498686
genomic: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttt ... atttttgcagTGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAG
EST: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA TGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGEST: gi|298164600|gb|HO014245.1|HO014245
genomic: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttt ... atttttgcagTGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAG
EST: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA TGTGTCTGCAGATACCTATGGTCTGGCTGCTTCG
genomic: AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttt ... atttttgcagTGTGTCTGCAGATACCTATGGTCTGGCTGCTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAAgtatggtttttgtctctacatttcttttaagatacggttaataaattctactgaagtttttattcaggatgccacaatgtactcccataaaatagttact
- - - - - - - - - - - - - CAGATG