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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTCGGATGTATTTATCCACACCAATTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGgtaattatttttatgtttcttttgaaccaatgggagttggaagacatttcttatttccaaagtcttttccatttgtttaaatacttgctcaactattgct...

Basic information

species Glycine max
transcript GLYMA06G08230.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08230.3 (Glycine max), 5'ss of exon 5
lower sequence: AT4G20325.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGGTCGGATGTATTTATCCACACCAATTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGgtaattat----ttttatgtttcttttgaaccaatgggagttggaagacatttcttatttccaaagtcttttccatttgtttaaatacttgctcaactattgct
||||  |  | ||| |  |||| ||| ||||||||||||||||  |||||||||| || || ||||| ||||||||||| | | |    |  | || |  | |  |  || |  |   ||   ||  || | | | ||  || | ||     | |  ||||||  | | ||          
ATGGAAGCTTATATATGGCCACTCCAGTTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctatgatcctttgctcttctcaattcattatgtcctgtctgat-ttccatttctcagaaatgttgatagtgttcttaaattgtcgatctgtag-----

upper sequence: GLYMA06G08230.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g03180.t01 (Vitis vinifera), 5'ss of exon 5
ATGGTCGGATGTATTTATCCACACCAATTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGgta--attatt----tttatgtttctt--ttgaaccaatgggagttggaagacatttcttatttccaaagtcttttccatttgtttaaatacttgctcaactattgct
|||| ||  | |||    ||||   | |||||||||||||||| |||||||| || |||||||||||||| |||||||||  || |||    || ||| | |||  ||  || | || || | | || |     ||| ||||   |||       ||  | || || || |  | || |  |   
ATGGGCGCCTATATACTGCCACTATAGTTGATCCTGTTTTCATTATGTTGCCCATTTTTGAGGAAGCTAGGATGAAGgtataataattgtcattcatgatccttattttcactactgtgattggcaacatgggcctt-tttcttcagtt------atccgattcaacacatcttaaaatggtag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259085|gb|BG881993.1|BG881993
EST:     TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAG                         AAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATT
genomic: TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGgtaattattt ... tttcttgcagAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATT
EST: gi|8283180|gb|BE020741.1|BE020741
EST:     TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAG                         AAAGGGGATGATCTTGGGAGGTTCANGCAACTGGATGAGATATTGTTTATT
genomic: TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGgtaattattt ... tttcttgcagAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATT
EST: gi|151395314|gb|EV265185.1|EV265185
EST:     TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAG                         AAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATT
genomic: TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGgtaattattt ... tttcttgcagAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATT
EST: gi|192305677|gb|FG994359.1|FG994359
EST:     TTGATCCTGTTTTTATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAG                         AAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATT
genomic: TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGgtaattattt ... tttcttgcagAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATT