Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGgtatgtatgaaaacaattttagtttcctttgccaccgtttaccatctcatgccatacctccgtttgttctccaattgatacatgtcactggtgtag

Basic information

species Glycine max
transcript GLYMA05G28140.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207697641|gb|GD680482.1|GD680482
EST:     ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAG                         GAACAACTTAGACTAAGTGAGGCTAA
genomic: ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGgtatgtatga ... actggtgtagGAACA-CTT-G-CTAAGTGAGGCTAA
EST: gi|193711279|gb|FK646100.1|FK646100
EST:     ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAG                         GAACACTTGCTAAAGTAAGAGGCTAACAG
genomic: ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGgtatgtatga ... actggtgtagGAACACTTGCTAA-GT--GAGGCTAACAG
EST: gi|207840968|gb|GD810209.1|GD810209
EST:     ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAG                         GAACACTTGACTAAGTGAGGCTAA
genomic: ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGgtatgtatga ... actggtgtagGAACACTTG-CTAAGTGAGGCTAA
EST: gi|6455734|gb|AW186417.1|AW186417
EST:     ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAG                         GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG
genomic: ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGgtatgtatga ... actggtgtagGAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG
EST: gi|207731537|gb|GD707066.1|GD707066
EST:     ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAG                         GAACACTTGCTAAGTGAGG
genomic: ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGgtatgtatga ... actggtgtagGAACACTTGCTAAGTGAGG
EST: gi|208188384|gb|GD983152.1|GD983152
EST:     ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAG                         GAACACTTGCTA
genomic: ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGgtatgtatga ... actggtgtagGAACACTTGCTA
EST: gi|208215896|gb|GE014614.1|GE014614
EST:     ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAG                         GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG
genomic: ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGgtatgtatga ... actggtgtagGAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG
EST: gi|207822175|gb|GD793536.1|GD793536
EST:     GGACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAG                         GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG
genomic: GGACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGgtatgtatga ... actggtgtagGAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG
EST: gi|207777183|gb|GD748278.1|GD748278
EST:     ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAG                         GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG
genomic: ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGgtatgtatga ... actggtgtagGAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG
EST: gi|208314542|gb|GE113878.1|GE113878
EST:     ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAG                         GAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG
genomic: ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGgtatgtatga ... actggtgtagGAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCCAGTTCATGTTGGATCAGCTCTCTGATCTTCAACGTAAGgtatgtatgaaaacaattttagtttcctttgccaccgtttaccatctcatgccatacctccgtttgttctccaattgatacatgtcactggtgtag

- - - - - - - -  TCAGCT
- - - - - - - - - CAGCTC