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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCATGGGTACACCAAATGAAGATACATGGCCTGGAGTGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAGgtaattaaatggattttttctttgcctgattttgtaattactataaaaatttagaatttaaccttattttgtactttgcag

Basic information

species Glycine max
transcript GLYMA05G25320.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25320.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 7
AATCATGGGTACACCAAATGAAGATACATGGCCTGGAGTGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAGgtaattaaatggattttttctttgcctg-attttgtaattactataaaaatttagaatttaaccttat----tttgtactttgcag
  |  |||| ||||||||||| ||||||||||| |||||||| || ||||| |||||||| || |||||||| || ||||  ||||||||    |||||| ||||   | ||| |  || |  | |||  |   |   || | |  || |  || |      | ||||||||||
GGTATTGGGCACACCAAATGAGGATACATGGCCAGGAGTGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgt----aaatgggttttgcatgtgcatctatctcatgatttttcatattgttgaaagattcatattgtgcttcctctactttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19054013|gb|BM732680.1|BM732680
EST:     TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAG                         GACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAGgtaattaaat ... tactttgcagGACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
EST: gi|209697835|gb|BW663952.1|BW663952
EST:     TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAG                         GACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAGgtaattaaat ... tactttgcagGACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
EST: gi|6455727|gb|AW186410.1|AW186410
EST:     TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAG                         GACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAGgtaattaaat ... tactttgcagGACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
EST: gi|254326866|gb|GR836475.1|GR836475
EST:     TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAG                         GACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAGgtaattaaat ... tactttgcagGACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
EST: gi|254343632|gb|GR857388.1|GR857388
EST:     TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAG                         GACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAGgtaattaaat ... tactttgcagGACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
EST: gi|51335099|gb|CO978965.1|CO978965
EST:     TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAG                         GACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAGgtaattaaat ... tactttgcagGACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
EST: gi|13481254|gb|BG510597.1|BG510597
EST:     TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAG                         GACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT
genomic: TGACATCATTGCCAGATTTTAAATCAGCCTTTCCCAAATGGCAACCTAAGgtaattaaat ... tactttgcagGACCTGAAAAATGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTT