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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCACGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAATTTTTGCGAACAGgtataatatttgccaacatgtatttctgtagataactaatgatggttgaagattttacttatgtttctcatggaattcccaacaatgatagacatggatt...

Basic information

species Glycine max
transcript GLYMA05G06140.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 4
GATCCACGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAATTTTTGCGAACAGgtataatatttgccaacatgtatttctgtagataactaatgatggttgaagattttac-ttatgtttctcatggaattcccaacaatgatagacatggatt
||||| ||  |||||| |||||| |||||||| || ||| ||||||| |||||||| || || || |||||||||||||||||||| ||||| || ||||||| |||  |||      || ||    || ||  || ||      || |  |||  |  |||   ||||| |||  || |       |             
GATCCTCGTCTATCTACTTTTGGTCTTATGAAGAACAGTAGAGATGGCAAAAGCTATAGCACAAACTTAGCTTATACTCCACCTGAGTTTTTACGGACAGgtaaaattcttgatcttgtgaatcgtagtcgaagacaaac--caattcattattgaagattaaagttctc-tggtttttcttttgcag-------------

upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 5
GATCCACGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAATTTTTGCGAACAGgtataatatttgccaacatgtatttctgtagataactaatgatggttgaagattttacttatgtttctcatggaattcccaacaatgatagacatggatt---
|| || || ||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || || |||||||||||||| || |||||||||||||||| | ||    |  | |  |       || || | | | |||   |  |  |  |  |||  ||| |  ||       | | | | |   |  ||       
GACCCTCGTTTATCAAGTTTTGGCCTTATGAAAAATAGTCGAGATGGTAAAAGCTACAGTACAAACTTGGCTTATACTCCACCAGAGTTTTTGCGAACAGgtacactac--actgaaacattacaacatatatcattcaggataaattgacttggttattaaattttttttgtcggcttcta-atttacttatttgttccaag

upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S156_133V6.1 (Physcomitrella patens), 5'ss of exon 5
GATCCACGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAATTTTTGCGAACAGgtataata---tttgccaacatgtatttctg-tagataactaa--tgatggttgaagattttacttatgtttctcatg-gaattcccaacaatgatagacatggatt----------------------------------
|| |||||  | ||  |||||||||| ||||| || ||  ||||||||||||||||||| || ||| | ||||| ||||| ||||| |  ||  ||||||||||   |   ||| ||    | |   ||   ||  | |  ||  ||    ||    ||||   |||||||     |  | || |  ||       |  | |   ||                                  
GACCCACGTCTCTCCTGTTTTGGGCTCATGAAGAACAGCAGAGATGGGAAAAGCTACAGCACCAATCTGGCTTACACTCCTCCTGAGTACTTAAGAACAGgtatcccacggtttccctctttctggatcgaatatttgagcaacctggaaattagcaatttctattatgttaaatgtatgcatgcataatgtatgcatgcttctctttggtacgtgacaaatgtcataagagggtttgcag

upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S9_348V6.1 (Physcomitrella patens), 5'ss of exon 5
GATCCACGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAATTTTTGCGAACAGgtataatatttgccaacatgtatttctgtagataactaatgatggttgaagattttacttatgtttctcatggaattcccaacaatgatagacatggatt-----------------------------------------------------------------------------
|| |||||  | ||  |||||||||| ||||| || ||  ||||||| ||||||||||| || ||||| ||||| ||||| ||||| |  ||| |||||||| ||| |  |         |  |||||   | | ||  ||| ||         |||  ||| ||| |    |  |||  || |  |||   ||  |  |                                                                             
GACCCACGTCTCTCCTGTTTTGGGCTCATGAAGAACAGCAGAGATGGAAAAAGCTACAGCACCAATTTGGCTTACACTCCTCCTGAGTACTTGAGAACAGgt-taacaactttttgggcat-cttctgggaagagcttgtgagggaatggtgggttagctatattttt----gtcttcgtaagatcgatgttcactgcctaagtcaatcggtcgaggaaccctggaactcccgtgattctgtttggtcagtgacggtcatttttcgatattttgcag