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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAATCTGAAGATGATGATTCTAATGATGATGGTCCTGTGGAGTGGGCTTCATATTGGAAACCAAATATAACAATAAACTTGGTTGCTGACTTCACTCAgtatgtttcttggaattcatttaatttattggcacattttttaactatatgtcctactttttgactgacataatttctgtttaaatttgattactgctga...

Basic information

species Glycine max
transcript GLYMA04G38120.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38120.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0130g00170.t01 (Vitis vinifera), 5'ss of exon 5
ATGAATCTGAAGATGATGATTCTAATGATGATGGTCCTGTGGAGTGGGCTTCATATTGGAAACCAAATATAACAATAAACTTGGTTGCTGACTTCACTCAgtatgtttcttggaattcatttaatttattggcacattttttaactatatgtcctactttttgactgac-ataatttctgtttaaatttgat-tactgctga--
 |||        | | |||||| || || || ||||||||||| |||   |||||||||||||||||||| ||||| || || |||| ||| |||||   ||||||||  |    ||  | |||   ||        ||| | |  || ||    | ||   |||  |  || |  | |    ||||||  | ||  | |    
TTGAGGACACTCAGGCTGATTCAAAAGACGAAGGTCCTGTGGATTGGATCTCATATTGGAAACCAAATATTACAATTAATTTAGTTGATGATTTCACAAGgtatgtttgctt---ttagtataaaccatctttgagctttgtgagaat-tggtgcatttagagacaaatgatcacattttcccaaatttcttgtatggttctat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685928|gb|AW756576.1|AW756576
EST:     TCATATTGGAAACCAAATATAACAATAAACTTGGTTGCTGACTTCACTCA                         GTACCCAAAAACAGGTGGAGCACCAAACATTGCTCCAT
genomic: TCATATTGGAAACCAAATATAACAATAAACTTGGTTGCTGACTTCACTCAgtatgtttct ... ctgcttgcagGTACCCAAAAACAGGTGTAGCACCAAACATTGCTCCAT
EST: gi|14258898|gb|BG881806.1|BG881806
EST:     TCATATTGGAAACCAAATATAACAATAAACTTGGTTGCTGACTTCACTCA                         GTACCCAAAAACAGGTGTAGCACCAAACATTGCTCCAT
genomic: TCATATTGGAAACCAAATATAACAATAAACTTGGTTGCTGACTTCACTCAgtatgtttct ... ctgcttgcagGTACCCAAAAACAGGTGTAGCACCAAACATTGCTCCAT