1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TATTCACAATGGAACCTTGTTGTGCAGCATCCTAATTTAGATAATATTACCCAGCTCTTCAGTTTTAATTACAAGTCACTAACACCCTATGAGGGCTTGAgtaagttctatctttcatagtcacattcctagatgatcttgtgaagaaaataccccaattcttatgttattgatttgcgaaatggttttacag
species | Glycine max |
transcript | GLYMA04G32130.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAGCTCTTCAGTTTTAATTACAAGTCACTAACACCCTATGAGGGCTTGA ATGATACAAGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTTCTTTCTTEST: gi|13240150|gb|BG359459.1|BG359459
genomic: CCAGCTCTTCAGTTTTAATTACAAGTCACTAACACCCTATGAGGGCTTGAgtaagttcta ... ggttttacagATGATACAAGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTTCTTTCTT
EST: CCAGCTCTTCAGTTTTAATTACAAGTCACTAACACCCTATGAGGGCTTGA ATGATACAAGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTTCTTTCTTEST: gi|31463675|gb|CD405703.1|CD405703
genomic: CCAGCTCTTCAGTTTTAATTACAAGTCACTAACACCCTATGAGGGCTTGAgtaagttcta ... ggttttacagATGATACAAGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTTCTTTCTT
EST: CCAGCTCTTCAGTTTTAATTACAAGTCACTTACACCCTATGAGGGCTTGA ATGATACAAGTATGCTGTGGGGATTCAAGTTCTACTATGATTTTCTTTCTTEST: gi|19054157|gb|BM732824.1|BM732824
genomic: CCAGCTCTTCAGTTTTAATTACAAGTCACTAACACCCTATGAGGGCTTGAgtaagttcta ... ggttttacagATGATACAAGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTTCTTTCTT
EST: TGAGGGCTTGA ATGATACAAGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTTCTTTCTT
genomic: TGAGGGCTTGAgtaagttcta ... ggttttacagATGATACAAGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTTCTTTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCACAATGGAACCTTGTTGTGCAGCATCCTAATTTAGATAATATTACCCAGCTCTTCAGTTTTAATTACAAGTCACTAACACCCTATGAGGGCTTGAgtaagttctatctttcatagtcacattcctagatgatcttgtgaagaaaataccccaattcttatgttattgatttgcgaaatggttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC