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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGCTCGGTCTACATAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGgtaattgtgattctgcccgttattattttcctaatcaaagttatccttttattttatttgcaatagtttattacctttttcctcattttccccatcatcatatatgaattactag

Basic information

species Glycine max
transcript GLYMA04G04810.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G04810.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g10640.1 (Oryza sativa), 5'ss of exon 5
GGCCGCTCGGTCTACATAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGgta--attg--tgattctgcccgtta--ttattttccta-atcaaagttatccttttattttatttgcaatagtttattaccttt-ttcctcattttccccatcatcatatatgaattactag
|| || || || ||||| || |||||||| ||||||||||||||||| || || ||||| || ||| |||| || || ||||| || ||||| ||||| ||||    |   || |  ||    |||  | ||| | ||  ||  || | ||  |||  ||    ||  ||||   | | |  ||  || ||  |  |  |                       
GGTCGGTCAGTGTACATTAATATTCAGAAGTTTGTGCAGTTTCAGCTGACAGTCAATGTGGTCGCTCTGATAGTGAACTTCTCCTCAGCTTGCTTGACAGgtacagctaaatgttgatgttttttacctcattctactgtatagaattgatagtttcgttccgattaaaataacctttgatgttggtttcttgtaataac-----------------------

upper sequence: GLYMA04G04810.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G006977_T01 (Zea mays), 5'ss of exon 5
GGCCGCTCGGTCTACATAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGgtaattgtgattctgcccgt-tattattttcctaatcaaagttatccttttattt-----tatttgcaata-gtttattacctttttcct---cattttccccatcat---catatatg--aattactag-----
|| || || || ||||| ||||||||||| ||||||||||||||||| ||||| ||||| |||||| || | || || ||||| || |||||  |||| ||||  |  |||    || || ||| | ||      |   |  |   ||  || ||     |||    |||    || ||   | |||| |    || |  | |||  |   |||  |||   ||| ||       
GGTCGATCAGTTTACATCAACATTCAGAAGTTTGTGCAGTTTCAGCTCACTGTCAATGTGGTTGCTCTGGTGGTAAACTTCTCCTCAGCTTGCCTGACAGgtacatccgatat--cctgtatatgagttcgtggtttggaaatcctctactacttgagcgtatcctgaatgtactttttgtttatttcataaatatatgtctcattgttcgcattcatgctgattgctgattcag

upper sequence: GLYMA04G04810.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G118919_T01 (Zea mays), 5'ss of exon 3
GGCCGCTCGGTCTACATAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGgtaattgtgatt-ctgcccgttattattttcctaatcaaagttatccttttatttt--atttgcaatagt--ttattacctttttcctcattttccccatcatcatatatgaattactag-------
||||| ||||| ||||| ||||| ||||||||||||||||| ||||| || || || || |||||  | |||||||| |||||||| |||||  |||  |||||     |   |  | || |  |   ||| |    |      |  ||  | | |  || || |||| |    |||  ||    || | |   |    |||| | || ||  |  | |        
GGCCGGTCGGTGTACATCAACATCCAGAAATTTGTGCAGTTCCAGCTGACAGTCAACGTCGTTGCGCTCATCGTCAACTTCTCTTCAGCTTGCCTGATAGgtaaaaaaaaaaacctcacgctgctgcgttcatctgtaggtgactgattccagtctgaatctgaaataatagacattgactggagcc-cgtaaacaaactcataaaatgtgcttgtcgattcatcag

upper sequence: GLYMA04G04810.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G27770.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCCGCTCGGTCTACATAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGgt-aattgtgattctgcccgttattattttcctaatcaaagttatccttttattttatttgcaatagtttattacctttttcctcattttccccatcatcatatatgaattactag
||||| || || |||||||| |||||||||||||| ||||| ||||| || ||||||||||| ||| | || ||||| ||||  || || ||  | |||||| | ||   |  |  |   ||||| || || |  |||||         | || |  |  |  || |   | || ||| |   | |  ||  |  | |  |  | ||  |  |   
GGCCGTTCTGTGTACATAAATATTCAGAAATTTGTCCAGTTCCAGCTGACAGTAAATGTTGTGGCTCTTATTGTCAACTTCTTATCAGCCTGCCTCACTGgttagttcccaacccacat-ttatttttctcttgttcaaaaga-----ctaatctcctcagggattgca-actaacttctctgttacattgacactaactac-tgtgggtctcag-

upper sequence: GLYMA04G04810.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ18007 (Selaginella moellendorffii), 5'ss of exon 3
GGCCGCTCGGTCTACATAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGgtaattgtgattctgcccgttattattttcctaatcaaagttatccttttattttatttgcaatagtttattacctttttcctcattttccccatcatcatatatgaattactag
|||||||||||||||| |||||| || || ||||||||||| ||||| || || ||  |||| ||  |  |  | |||||  | ||||||||  | || |||||    ||||||   |  | | | ||      ||  |  | |   ||| | || | |    | ||| || |                                          
GGCCGCTCGGTCTACACAAACATCCAAAAGTTTGTGCAGTTCCAGCTTACAGTGAACCTTGTGGCCCTCGTGTTGAATTTTACATCTGCTTGCATCACAGgtaa----gattctttactctttaagttcttgggtctcatatgtgactttttcttctct--tgtcgttgatcag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566478|gb|AW234123.1|AW234123
EST:     TGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTG                         GAAATGCTCCCCTCACTGCGGTTCAACTTCTATGGGTCAACATGATCATGG
genomic: TGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGgtaattgtga ... gaattactagGAAATGCTCCCCTCACTGCGGTTCAACTTCTATGGGTCAACATGATCATGG