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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGGAATGCCTTGTCCTTTGGAACCTGTACTAGGACACTCCGACAACACTCTGACTATGTTACTTGCCTTGCAGCAGCAGGAAAAAATgtaatgtacttcaatcatcttatgcttcttattaagtgcatcaagaaaaagttcattttattgtttttatacgttccacattgagtcagatagatactttggttgaattatcagtatcaactgtcaaatccattatttgatcgtttaatagtgtcatgcattttag

Basic information

species Glycine max
transcript GLYMA03G40360.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40360.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 5
ACATGGAATGCCTTGTCCTTTGGAACCTGTACTAGGACACTCCGACAACACTCTGACTATGTTACTTGCCTTGCAGCAGCAGGAAAAAATgtaatgtactt--caatcatcttatgcttcttattaagtgcatcaagaaaaagttcattttattgt-------ttttatacgttccacattgagtcagatag-atac-tttggttgaattatcagtatcaactgtcaaatccattatttgatcgtttaatagtgtcatgcattttag
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ACCTGGAATTGCTTGTCTGATGGAACTTGTACCAGGACTCTCCGTCAACACTCTGACTATGTTACTTGTCTCGCTGCAGCAGAAAAAAATgtaatttctttgtcaaaattttcatggaa-ttatttactgcatagatgaagggttcttgtcagtgtaatgctgttatttaagtttcatgttcaatttaatggtgcatatttgggggcattgt-gtcatattttgtcgttatcattttctgatccttttatagtgtcatgcattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213617649|gb|DB967207.1|DB967207
EST:     TCCGACAACACTCTGACTATGTTACTTGCCTTGCAGCAGCAGGAAAAAAT                         AGCAATATTGTTGCCTCTGGTGGCCTTGGGCGGG-AGGTTTTTATATGGGA
genomic: TCCGACAACACTCTGACTATGTTACTTGCCTTGCAGCAGCAGGAAAAAATgtaatgtact ... tgcattttagAGCAATATTGTTGCCTCTGGTGGCCTTGG-CGGGGAGGTTTTTATATGGGA