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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGCTTTCTTTACAACATATGCACTTTTGgtcctgttctaggctgagatttattaccaggcaagtttgatttgtggtgcatttgcttctacatggttggtttgcctcctatgattttcttcttccatggcagtgtgttttgctgattggttttgatgggctaattaccacctgggtgttaaatgcttttgcag

Basic information

species Glycine max
transcript GLYMA03G06700.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G06700.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G003076_T02 (Zea mays), 5'ss of exon 4
--------------------------------TCTTGCTTTCTTTACAACATATGCACTTTTGgtcctgttctaggctgagatttattaccaggcaagtttgatttgtggtgcatttgcttctacatggttggtttgcctcctatgattttcttcttccatggcagtgtgttttgctgattggttttgatgggctaattaccacctgggtgttaaatgcttttgcag
                                 ||||| ||||| || |||||||||||||| || || |||| ||||||||||||||| |||| |   ||  ||| ||   |  |||   ||  || |||   |         ||    ||||  |   ||    |||  | |                                                     
ATAATACAACATGTGCTTCTGGATATGCCCGGGCTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAGgta---tttctttttgtctctgttggacctctattgttttgtcaatgttgttgtgcctcttaatttttgttcctgttctctag---------------------------------------------------

upper sequence: GLYMA03G06700.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 5
--------------------------------TCTTGCTTTCTTTACAACATATGCACTTTTGgtcctgttctaggctgagatttattaccaggcaag---tttgatttgtggtgcat-----ttgcttctacatggttggtttgcctcctatgattttcttcttccatggcagtgtgttttgctgattggttttgatgggctaattaccacctgggtgttaaatgcttttgcag
                                 ||||| ||||| || |||||||||||||| || || |||| ||||||||||||||| |||| |     ||| || | || |  |      ||| ||   ||  |||| | |||||| ||   |||| ||| |       ||                                                             
ATAATACAACATGTGCTTCTGGATATGCCCGGGCTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAGgtatttccttttatctctgttagacctctattgttttgtcaatgttgttgtgcctctta-atttttgttcctgttctctag-------------------------------------------------------------

upper sequence: GLYMA03G06700.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G055462_T01 (Zea mays), 5'ss of exon 5
---------------------------------------TCTTGCTTTCTTTACAACATATGCACTTTTGgtcctgttctaggctgagatttattaccaggcaagtttgatttgtggtgcatttgcttctacatggttggtttgcctcctatgattttcttcttccatggcagtgtgttttgctgattggttttgatgggctaattaccacctgggtgttaaatgcttttgcag
                                       | |||| ||||| || |||||||||||||| || || |||| ||||||||||||||| || | |   ||  ||| ||   |  |||   ||  || |||   |         ||    ||||  |   ||    |||  | |                                                     
CTCAGATAATACAACATGTGCTTCTGGATATGCCCGGGCTTTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAAgta---tttctttttgtctctgttggacctctattgttttgtcaatgttgttgtgcctcttaatttttgttcctgttctctag---------------------------------------------------

upper sequence: GLYMA03G06700.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G174286_T03 (Zea mays), 5'ss of exon 5
--------------------------------TCTTGCTTTCTTTACAACATATGCACTTTTGgtcctgttctaggctgagatttattaccaggcaagtttgatttgtggtgcatttgcttctacatggttggtttgcctcctatgattttcttcttccatggcagtgtgttttgctgattggttttgatgggctaattaccacctgggtgttaaatgcttttgcag
                                 ||||| ||||| ||||||||||||||| | || || |||| ||| ||||||||||| |||| |   | | |||||     ||   | |||  || |||   ||        ||   |||||  |   ||      |||| ||  |                                                 
ATAATACAGCATGTGCTTCTAGATATGCCTGGGCTTGCATTCTTCACAACATATGCACTTCTAGTGCTCTTCTGGGCAGAGATTTATTATCAGgtac-ctcgttttgtctctgatagacctctctattgttttgttaatgttgttgcgcttcttaatttttgtt--catgttctgtag-------------------------------------------------