Sequence
atgc intronic sequence ATGC exonic sequenceGTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtgtgaatgttatttattgaacaatcatgactttttaatataataagtatttcttagctgactttaatgacctatttgcctgttttag
Basic information
species | Glycine max |
transcript | GLYMA02G07260.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07260.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 5
GTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtg---tgaatgttattta---------ttgaa--caatcatgactt-------tttaatataataagtatttcttagctg-actttaatgacctatttgcctgttttag------------------------
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GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGAAAGCAAACTGGAAGgtagattgcatgccactgagtttttggctttaagccaattctttcttgttttatttcaaaggactcagaaatgcgagggtatggtttcatcttttgttagtcaactctaattagtttgttttccttctgtatag
upper sequence: GLYMA02G07260.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G12840.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtgtgaatgttatttattgaacaatcatgactttttaatataataagtatttcttagctgactt--taatgacctattt----gcctgttttag-----------
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GTTCGTGTTGCTGAATATAACAATATCCGTGGTCAACTCAATGCCATTAACCGAAAGCAAAGTGGAAGgt---aattcttttcttctcatatttatactataagagcacactagaaact--gtgggcggtttagcaacaacaaattttgaagtttgttttctcatctatctga
upper sequence: GLYMA02G07260.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 5
GTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtgt---------gaatgttatttattgaacaatcatgactttttaatataataagtatttcttagctgactttaatgacctatttgcctgttttag
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GTTCGCATTGCTGAGTATAATAATGTGCGCAGTCAGCTCAATGCTATTAATCGAAAGCAAAGTGGAAGgtataccttggttgaaatctgtttgtaggacaaacaagatttt---atttactgtg-atttcttttctgatc-----gacctctttgcttgcttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298166776|gb|HO010215.1|HO010215EST: AACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAG CTTAGCTGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGATATTATAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtgtgaatgt ... cctgttttagCTTAGCTGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGATATTATAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGgtgtgaatgttatttattgaacaatcatgactttttaatataataagtatttcttagctgactttaatgacctatttgcctgttttag
- - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG