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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAGTGTGTTGCAAACTTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACAAACTCTGCTATTCTTCCAGTCTTGATGGGGAAGgtttgtgaaatttagtggttttaccttgttgagacactaatgattgcatgattatgcgttgatgtaactttcttttgcag

Basic information

species Glycine max
transcript GLYMA02G07250.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
GGAGGAGTGTGTTGCAAACTTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACAAACTCTGCTATTCTTCCAGTCTTGATGGGGAAGgtttgtgaaatttagtggttttaccttgttgag------acactaatgattgcatga-ttatgc-gttgatgtaactttctt--ttgcag
 || |||  ||||||||  |||||||| ||||| || |||||  ||||||| ||||||||||||||||||||||||||  ||||||   || | |||||||| |||   || | |||    ||  |  |  |           |  |  || |||||  | ||| | ||| |  ||| |  |  ||||||
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtgaagatatatgctcaaactttctgttttgttcttttcatgagctctgcagctgaggctactgtaataattgcag

upper sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAGGAGTGTGTTGCAAACTTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACAAACTCTGCTATTCTTCCAGTCTTGATGGGGAAGgtttgtga-aattta-----------------gtggttttaccttgttgagacactaatgattgcatgattatgcgttgatgtaactttcttt-tgcag
 ||||| |||||| | |  ||||| || ||||| |||||| | |||||||| ||||||||||  ||||| || |||||  ||||||||||||| || ||||| ||      ||||                 ||   ||  |  | ||   | ||  ||| ||   |   |||   ||  ||| |  |  | | | |||
TGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGGCTATCATTCCAGTCTTGATTGGAAAGgtatgcattggtttaccctttatgatgaaggcgtatgttgtctcttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttgtatacag

upper sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 5
GGAGGAGTGTGTTGCAAACTTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACAAACTCTGCTATTCTTCCAGTCTTGATGGGGAAGgtttgtgaaatttagtggttttaccttgttgagacactaatgattgcatgattatgcg--ttgatgtaactttcttttgcag---------------------------------
|||  ||| ||| ||||| |||||||| || |||||||||||||| ||||| |||||||| |||||||||||||| || ||||||||  ||||  | |||||||||  | || | |  |   | |   |    |||  |  | |  | ||  |  |    ||  ||| |||     ||| |                                  
GGAAAAGTATGTCGCAAATTTTGTTGGAAAACCAGCTGCTATAGTGTTTGGAATGGGCTACGTGACAAACTCTGCCATCCTTCCAGTTCTGATTAGTAAGgtttgtacagttaactaataagagcacttcataaca--agggttcacgtggcttagaagctttgtgtcactaatccttgaatgtgaatgttttggcttgttatttctgtttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7147563|gb|AW509485.1|AW509485
EST:     TATGGGCTATGTGACANACTCTGCTATTCTTCCAGTCTTGATGGGGGAAG                         T-AAGTGTGATTATTAGTGATGCATTGAACCACAACTACATTGTTAATGG
genomic: TATGGGCTATGTGACAAACTCTGCTATTCTTCCAGTCTTGATGGGG-AAGgtttgtgaaa ... tcttttgcagGGAAGTTTGATTATTAGTGATTCATTGAACCACAACTCCATTGTTAATGG
EST: gi|17400406|gb|BM177188.1|BM177188
EST:     GTATGGGCTATGTGACAAACTCTGCTATTCTTCCAGTCTTGATGGGGAAG                         GGAAGTTTGATTATTAGTGATTCATTGAACCACAACTCCATTGTTAATGGT
genomic: GTATGGGCTATGTGACAAACTCTGCTATTCTTCCAGTCTTGATGGGGAAGgtttgtgaaa ... tcttttgcagGGAAGTTTGATTATTAGTGATTCATTGAACCACAACTCCATTGTTAATGGT
EST: gi|10237694|gb|BE806582.1|BE806582
EST:     GTATGGGCTATGTGACAAACTCTGCTATTCTTCCAGTCTTGATGGGGAAG                         G-AAGTTTGATTATTAGTGATTCATTGAACCACAACTCCATTGT
genomic: GTATGGGCTATGTGACAAACTCTGCTATTCTTCCAGTCTTGATGGGGAAGgtttgtgaaa ... tcttttgcagGGAAGTTTGATTATTAGTGATTCATTGAACCACAACTCCATTGT