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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAGTAAAGGCTGCAATTGTTACTTGTGGGGGCTCTGCCCTGGTCTTAATGATgtcatctgacagtttagttcgatatgaaattgtttctcatatggctttgacaaattttagattaaatattaaagctttgcaataaagttaaggaagcaaa...

Basic information

species Glycine max
transcript GLYMA02G04570.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G04570.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0199g00240.t01 (Vitis vinifera), 5'ss of exon 3
--------------------------------AAGAAGTAAAGGCTGCAATTGTTACTTGTGG-GGGCTCTGCCCTGGTCTTAATGATgtcatctgacagtttagttcgatatgaa--attgttt--ctca-tatggctttgacaaattttagattaaatattaaagctttgcaataaagttaaggaagcaaa-------
                                ||  |||||| || |||||||| ||||| || |||||||||||||||||||||||||| ||| ||||| |   |   || |  |  | | |    |||| | |   | |||  || ||     ||  |   ||  | |     |  ||  |    ||||         
TGGGCCTCGGGAAAAAATATACTTCAAACCTGAAACAGTAAATGCAGCAATTGTAACTTGCGGAGGGCTCTGCCCTGGTCTTAATGATGTTATCAGACAGgtagttagcatgtccaccactatcctgctcagtctttttctgatgaaattagccatatcttacaacccctgatgttgcagacactatagcaccatttgac

upper sequence: GLYMA02G04570.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 4
--------------------------------AAGAAGTAAAGGCTGCAATTGTTACTTGTGG-GGGCTCTGCCCTGGTCTTAATGATgtcatctgacagtttagttcgatatgaa--attgttt--ctca-tatggctttgacaaattttagattaaatattaaagctttgcaataaagttaaggaagcaaa-------
                                ||  |||||| || |||||||| ||||| || |||||||||||||||||||||||||| ||| ||||| |   |   || |  |  | | |    |||| | |   | |||  || ||     ||  |   ||  | |     |  ||  |    ||||         
TGGGCCTCGGGAAAAAATATACTTCAAACCTGAAACAGTAAATGCAGCAATTGTAACTTGCGGAGGGCTCTGCCCTGGTCTTAATGATGTTATCAGACAGgtagttagcatgtccaccactatcctgctcagtctttttctgatgaaattagcgatatcttacaacccctgatgttgcagacactatagcaccatttgac