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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGTAAGCAGTGGAATGCGAAGGTGTCAGACTTTGGACTCGCCAAACTCCTTGGCTCCGACAACAGCTATATTACAACCCGTGTCATGGGTACATTTGGgtttgtatagtcttccttctctattgttggcccattccttccttacaagtatcggtcattatgggtttccagcaattgccttacttgtttttctttttgcag

Basic information

species Glycine max
transcript GLYMA01G39420.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39420.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g00480.t01 (Vitis vinifera), 5'ss of exon 4
TTAGTAAGCAGTGGAATGCGAAGGTGTCAGACTTTGGACTCGCCAAACTCCTTGGCTCCGACAACAGCTATATTACAACCCGTGTCATGGGTACATTTGGgtttgtatagtcttccttctctattgttggcccattccttccttacaagtatcggtcattatgggtttccagcaattgccttacttgtttttctttttgcag
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TTGATAAGCAGTGGAATCCCAAGGTTTCAGACTTTGGCCTTGCCAAGCTCCTTGGCTCAGAGCACAGCTATGTAACAACCCGAGTGATGGGAACATTTGGgtatgtatgatctttctccttccctctt--ccccttcccttctctc------ctgtgaagaagaggtggtgac--------tatttgtttctgtttttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323263|gb|FK015269.1|FK015269
EST:     CTTGGCTCCGACAACAGCTATATTACAACCCGTGTCATGGGTACATTTGG                         ATATGTTGCTCCTGAATACGCAAGTACTGGCATGTTGAATGAACGGAGTGA
genomic: CTTGGCTCCGACAACAGCTATATTACAACCCGTGTCATGGGTACATTTGGgtttgtatag ... ctttttgcagATATGTTGCTCCTGAATACGCAAGTACTGGCATGTTGAATGAACGGAGTGA