Sequence
atgc intronic sequence ATGC exonic sequenceGGGCATGGAAGCTATGAAGACCGTACTGAAATGCTTCGTCTTATTGTTGATCTAGTGGAGGCAACAATATGCTCAGATAATCCAGAATGGAGgttgtccaccatcatatatatttgagtgataaatttttttccctataattttgttttgcagagatgaaattaacataaatttggtttgtattctgatttctgtag
Basic information
species | Glycine max |
transcript | GLYMA01G29280.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G29280.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G17620.1 (Arabidopsis thaliana), 5'ss of exon 4
GGGCATGGAAGCTATGAAGACCGTACTGAAATGCTTCGTCTTATTGTTGATCTAGTGGAGGCAACAATATGCTCAGATAATCCAGAATGGAGgttgtccaccatcatatatatttgag-----tgataaatttttttcccta------taattttgt---tttgcagagatgaaattaacataaatttggtt-tgtattctgatttctgtag-------------------------------------
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GGACATGGAACCTATGAAGATCGGATGGAAATGCTTCGCAATATTGTTGATTTAGTGGAGGCGAGCCTCTTCTCAGATAATCAAGAATGGAGgtagaca--tgtcacttgtatctgatatcttccaccagtttttatcattagtgtggcatttttgtagtctttcatcttccttattcccgtcgactttattatgtgttttgttctttgagcataagactgcataacaatgattttgcttattcttcag
upper sequence: GLYMA01G29280.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0024g01470.t01 (Vitis vinifera), 5'ss of exon 4
GGGCATGGAAGCTATGAAGACCGTACTGAAATGCTTCGTCTTATTGTTGATCTAGTGGAGGCAACAATATGCTCAGATAATCCAGAATGGAGgttgt--ccaccatcatatatatt-tgagtgataaatttttttccct--ataat-----tttgttttgcagagatgaaattaacataaatttggtttgtattctgatttctgtag
|| | |||| ||||||||| || || |||||||| ||||||||||||||||| |||||||||| || | | ||||||||||||||||||| | || | | | || || |||||| || || | ||||| ||| ||| || || | | | |||| | | |
GGACGAGGAACCTATGAAGATCGCACAGAAATGCTCCGTCTTATTGTTGATCTTGTGGAGGCAAGCATCTATGCTGATAATCCAGAATGGAGgtggagatgactctgagtttggttgtggttgataagttgttcatgtttgataatgaaactttaatttttgtggaacaagagatcctttttttgataagaa---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51337334|gb|CO981200.1|CO981200EST: GATCTAGTGGAGGCAACAATATGNNCAGATAATCCAGAATGGAG TGTTGACGAGCAGGTAGCCAAGGACATCCAATTGATAGACTCCATTGCAGA
genomic: GATCTAGTGGAGGCAACAATATGCTCAGATAATCCAGAATGGAGgttgtccacc ... atttctgtagTGTTGACGAGCAGGTAGCCAAGGACATCCAATTGATAGACTCCATTGCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGCATGGAAGCTATGAAGACCGTACTGAAATGCTTCGTCTTATTGTTGATCTAGTGGAGGCAACAATATGCTCAGATAATCCAGAATGGAGgttgtccaccatcatatatatttgagtgataaatttttttccctataattttgttttgcagagatgaaattaacataaatttggtttgtattctgatttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG