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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatgacactcataatatgcaaaccccccttggctttcgcacaaaatctcctttctttattaattaaattcaattcaattatatatctttcag

Basic information

species Glycine max
transcript GLYMA01G03940.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207836733|gb|GD807038.1|GD807038
EST:     CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG                         -CCATAGCTCTTATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatgac ... tatctttcagACCATAGCTCTTATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: gi|193414491|gb|FK377463.1|FK377463
EST:     CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG                         ACCATAGCTCTTATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatgac ... tatctttcagACCATAGCTCTTATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: gi|12689978|gb|BG156314.1|BG156314
EST:     CACCCTATGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG                         ACCATAGCTCTTATTGCTGTAAGAGAAGGTGTTGTTCAATTACGAGCTGTT
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatgac ... tatctttcagACCATAGCTCTTATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: gi|193722485|gb|FK662579.1|FK662579
EST:     ACTT-GGAAGCCCAGTTCCTGTCTGGTATAAAG                         ACCATAGCTCTTATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
genomic: ACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatgac ... tatctttcagACCATAGCTCTTATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: gi|207683745|gb|GD665048.1|GD665048
EST:     AAGCCCAGTTCCTGTCTGGTATAAAG                         ACCATAGCTCTTATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
genomic: AAGCCCAGTTCCTGTCTGGTATAAAGgtactatgac ... tatctttcagACCATAGCTCTTATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: gi|16348841|gb|BI974436.1|BI974436
EST:     CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG                         ACCATAGCTCTTATTGCTGTA
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatgac ... tatctttcagACCATAGCTCTTATTGCTGTA