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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTGgtatgatacatttttttcaactgtttcctctattactggtcattaacttattccacttaatttcttgctgtagttttttttcttctaaaatgttggctta...

Basic information

species Glycine max
transcript GLYMA01G01390.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01390.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g20580.1 (Oryza sativa), 5'ss of exon 5
GTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTGgtatga-tacatttttttcaactgttt----cctctattactggtcattaacttattccacttaatttcttgctgtagttttttttcttctaaaatgttggctta
|| || |||||||||||||| ||||| || |||||||||||||    |||  |  | ||  |  | |||||    |||||| ||  | ||||  | ||  |  ||     | | | |   ||    |  || | || ||    || | ||  | |  |||  |  ||| | |  || | |    
GTTCTAGATGAAGCTGATCGAATGCTGGATATGGGTTTTGAACCTGAAGTCAGAGCAATTTTAAGCCAAACTGCATCTGgtttgtctccattactctcttcctttcagggcatgtgtatgtgcatgtccacct-ttgcatcgcatgtattcttttcctttcatccctttttatctggttg----

upper sequence: GLYMA01G01390.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0109g00380.t01 (Vitis vinifera), 5'ss of exon 7
GTACTTGATGAAGCTGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTGgtatgatacatttttttcaactgtttcctc-tattactggtcattaacttattccacttaatttc--ttgctgtagttttttttcttctaaaatgttggctta
||  | |||||||| ||||| ||||| |||||||| ||||||| |  ||||||||||||| |  | || || ||| ||||||||  | |   | || ||| |||||||| |  | ||  |  ||  ||| |  | ||   | ||  |   | ||   | || | || |  ||| |    |  
GTGTTAGATGAAGCAGATCGTATGCTGGACATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTGgtatgtgataaaatatt-aacagtttcctcctgctgcttcttcttt-cttctctctctctctctcaatctatatacactgttctttttttgaatttgaattc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7285515|gb|AW598002.1|AW598002
EST:     CATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTG                         ATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATTACT
genomic: CATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTGgtatgataca ... ttgtctgcagATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATTACT
EST: gi|6915515|gb|AW397045.1|AW397045
EST:     CATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTG                         ATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATTACT
genomic: CATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTGgtatgataca ... ttgtctgcagATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATTACT
EST: gi|19269661|gb|BM885917.1|BM885917
EST:     CATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTG                         ATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTG
genomic: CATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAAACGTGTTCTGgtatgataca ... ttgtctgcagATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTG