Sequence
atgc intronic sequence ATGC exonic sequenceGGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCTTGGAGTCTACCCGCACATTAATATCTTCTgtaagttgattcttgctctatttttttaggcaaatctgacacccaaactgctaaaacattaaattttcatttagttgcatttaggatctcttttttttctaggtatttctaatgtgtctcgtaatgacatttccag
Basic information
species | Glycine max |
transcript | GLYMA18G52280.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G52280.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g62070.3 (Oryza sativa), 5'ss of exon 4
GGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCTTGGAGTCTACCCGCACATTAATATCTTCTgtaagttgattcttgctctatttttttaggcaaatctgacacccaaactgct--------aaaacatta------aattttcatttagttgcatttaggatctcttttttttctaggtatt-----tctaatgtgtctcgtaatg-acatttccag----------------------------
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GGAATACTTGTCTTTGCCTCTGTTATGGCGACACTTGGCCTTCAGATCATCCTAGAATCAGTACGCTCGTTGTTGTCTGATgtaagtctgctgatgttttgttggccttg--aactcctactctcattttgcttttgaccagaaactttgcctgaggatttcttttctagaacgataagtgtctttgatgtttgttggctttgaaattctgttgtagcttgccatatacctttctgattgctgaacttattgtcttgttctccag
upper sequence: GLYMA18G52280.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G014454_T01 (Zea mays), 5'ss of exon 4
GGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCTTGGAGTCTACCCGCACATTAATATCTTCTgtaagttgattcttgctctatttttttaggcaaatctgacacccaaactgctaaaacattaaattttcatttagttgcatttaggatctcttttttttctaggtatttctaatgtgtctcgtaatgacatttccag
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GGAATACTTGTTTTTGCTTCTGTTATGGCAACCCTTGGCCTTCAGATAATTCTAGAATCAGTACGTTCATTGGTGTCTGATgtaagtc--tctctaatacatttcatttc-ca---ttgctctttgaggcattacca-attatattttca---ggttgc-tttagagtagatatttctattgggttttagtt-------------------------
upper sequence: GLYMA18G52280.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g00020.t01 (Vitis vinifera), 5'ss of exon 4
GGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCTTGGAGTCTACCCGCACATTAATATCTTCTgtaagttgattcttgctctatttttttaggcaaatctgacacccaaactgctaaaacattaaattttcatttagttgcatttag-gatctcttttttttctaggtatttctaatgtgtctcgtaatgacatttccag
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GGAATCCTTGTTTTTGCTTCTGTTATGGCAACTCTGGGACTGCAGATAATCTTGGAGTCAGTACGCACACTATCATCTGACgtaagtggctgatctaattcaattattagtgtaagaaggaacctttttcatagatgaattttactttaattcatttgtgaacaatgaactaatggttatcaa----tctgtcatataaataatgtgtcctttcccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151393928|gb|EV263799.1|EV263799EST: CACTTGGACTGCAGATAATCTTGGAGTCTACCCGCACATTAATATCTTCT GAAAATGCATTCAACTTGACCAAGGAACAAGAGCGCTGGGTTGTGGGCATT
genomic: CACTTGGACTGCAGATAATCTTGGAGTCTACCCGCACATTAATATCTTCTgtaagttgat ... acatttccagGAAAATGCATTCAACTTGACCAAGGAACAAGAGCGCTGGGTTGTGGGCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCTTGGAGTCTACCCGCACATTAATATCTTCTgtaagttgattcttgctctatttttttaggcaaatctgacacccaaactgctaaaacattaaattttcatttagttgcatttaggatctcttttttttctaggtatttctaatgtgtctcgtaatgacatttccag
- - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG