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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtacaactctacaaattattatctgaaactgtttgaagcaatgtctaaactcaccatttcatgtcaatttgtgta

Basic information

species Glycine max
transcript GLYMA18G48610.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21993817|gb|BQ785345.1|BQ785345
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|213615420|gb|DB965506.1|DB965506
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|298174542|gb|HO017765.1|HO017765
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|8403151|gb|BE058785.1|BE058785
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|213619737|gb|DB967359.1|DB967359
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|13181256|gb|BG352596.1|BG352596
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|213590611|gb|DB973342.1|DB973342
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|192299109|gb|FG992870.1|FG992870
EST:     TGATGATTCGTACATCGAGAGCTACATAAACACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|254317320|gb|GR826265.1|GR826265
EST:     CATAAGCACCATTGGAGTTGATTT                         -AAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: CATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|209726159|gb|BW677900.1|BW677900
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|213617461|gb|DB965248.1|DB965248
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATCTG
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATGTG
EST: gi|254317319|gb|GR826264.1|GR826264
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|298182292|gb|HO026467.1|HO026467
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|21600841|gb|BQ611172.1|BQ611172
EST:     TTANGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|151407899|gb|EV277714.1|EV277714
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|192322414|gb|FK014895.1|FK014895
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|19346832|gb|BM891712.1|BM891712
EST:     GCTGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GCGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|8826765|gb|BE210495.1|BE210495
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|14259352|gb|BG882260.1|BG882260
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|209719631|gb|BW672086.1|BW672086
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|298184517|gb|HO029730.1|HO029730
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
EST: gi|213602253|gb|DB958513.1|DB958513
EST:     TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT                         TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT
genomic: GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtaca ... aatttgtgtaGAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTtgtgagtacaactctacaaattattatctgaaactgtttgaagcaatgtctaaactcaccatttcatgtcaatttgtgta

- - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - -  TTGGAG