Sequence
atgc intronic sequence ATGC exonic sequenceATTCAAAAAATTGAGCTAAATGATGATGGAACGGTGAAGAGCTTCTTACTAAATAATGGGAAAGTGATGGAAGGGGATGCTTATGTGTTTGCAACTCCAGgtgttttttcttcttcttattttacgaatgtaataattaattgttttcatgacattcttaatcttcactccttaacattttttaggttctttttcttgaaaacag
Basic information
species | Glycine max |
transcript | GLYMA18G00720.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G00720.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G14210.2 (Arabidopsis thaliana), 5'ss of exon 9
ATTCAAAAAATTGAGCTAAATGATGATGGAACGGTGAAGAGCTTCTTACTAAATAATGGGAAAGTGATGGAAGGGGATGCTTATGTGTTTGCAACTCCAGgtgttttttcttcttcttattttacgaatgtaataattaattgttttcatgacattcttaatcttcactccttaacattttttaggttctttttcttgaaaacag
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ATAAAGAAAATTGAGCTCAATGACGATGGCACGGTTAAGAGTTTCTTACTCACTAATGGAAGCACTGTCGAAGGAGACGCTTATGTGTTTGCCGCTCCAGgt---ttactaccatgctgtcttgtgggtttaacaattcatc-------tggtatcctgcttattaat------atgttgtttatgtttttcttgtag-------
upper sequence: GLYMA18G00720.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 9
ATTCAAAAAATTGAGCTAAATGATGATGGAACGGTGAAGAGCTTCTTACTAAATAATGGGAAAGTGATGGAAGGGGATGCTTATGTGTTTGCAACTCCAGgtgttttttcttcttcttattttacgaatgta-ataattaattgttttcatgacattcttaatcttcactccttaacattttttaggttctttttcttgaaaacag
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ATACAAAAGATTGAGCTGAACAAAGACGGAACTGTGAAGAGTTTTGTGCTAAATAATGGGAATGTAATTAAAGGAGATGCTTATGTAATTGCAACTCCAGgtatgcattttaactctctcttt--gattgtacatttttcttcatgtgtataac----ctcagcttctcta-ttgttgcttttgaaatttgttttaatcag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151400218|gb|EV270032.1|EV270032EST: AAATAATGGGAAAGTGATGGAAGGGGATGCTTATGTGTTTGCAACTCCAG TGGATATTCTGAAGCTTCTTCTACCAGATAACTGGAAAGGGATTCCATATT
genomic: AAATAATGGGAAAGTGATGGAAGGGGATGCTTATGTGTTTGCAACTCCAGgtgttttttc ... ttgaaaacagTGGATATTCTGAAGCTTCTTCTACCAGATAACTGGAAAGGGATTCCATATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCAAAAAATTGAGCTAAATGATGATGGAACGGTGAAGAGCTTCTTACTAAATAATGGGAAAGTGATGGAAGGGGATGCTTATGTGTTTGCAACTCCAGgtgttttttcttcttcttattttacgaatgtaataattaattgttttcatgacattcttaatcttcactccttaacattttttaggttctttttcttgaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG