Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGATGGAGGATGGATTGCTCGAATTGCAGCATTGCTTGTGGGTGAGGATCCAACACAGTCTTATGCACTTATATGCGGTAACTGCCACATGCATAATGgtaagttggctgcatttgatgttctaggcttatgttcatacacaaagtaatagctacttatcatttctgaatacagtttaaattgtgtttttgtctacttgtttcctttcag

Basic information

species Glycine max
transcript GLYMA17G29620.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G29620.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0432g00020.t01 (Vitis vinifera), 5'ss of exon 2
AACGATGGAGGATGGATTGCTCGAATTGCAGCATTGCTTGTGGGTGAGGATCCAACACAGTCTTATGCACTTATATGCGGTAACTGCCACATGCATAATGgtaagttggctg-------------catttgatgttctaggcttatgttcatacacaaagtaatagctacttatcatttctgaatacagtttaaattgtgtttttgtctacttgtttcctttcag-------------------------------------
 | ||||| |||||||||||||||||||| ||| | |||||||| |||||||||||| ||||||||||||||||||| || ||||| || |||||||||||||||| |  ||              |                                                                                                                                       
CATGATGGGGGATGGATTGCTCGAATTGCTGCACTACTTGTGGGGGAGGATCCAACAGAGTCTTATGCACTTATATGTGGAAACTGTCATATGCATAATGgtaagtggagtgaggacctcatccttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagtagttttgtcctgtttttgtttttgtgcag

upper sequence: GLYMA17G29620.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0215g00090.t01 (Vitis vinifera), 5'ss of exon 5
AACGATGGAGGATGGATTGCTCGAATTGCAGCATTGCTTGTGGGTGAGGATCCAACACAGTCTTATGCACTTATATGCGGTAACTGCCACATGCATAATGgtaagttggctgc--atttgatgttctaggcttatgttcataca-caaagtaatagctacttatcatttctgaatacagtttaaattgtgtttttgtctacttgtttcctttcag
 | ||||| |||||||||||||||||||| ||| | |||||||| |||||||||||| ||||||||||||||||||| || ||||| || |||||||||||||||| |  ||   |  | ||  |       | | ||  | |  ||   | |    |  | |||||| ||        |||      |||      ||  |  ||         
CATGATGGGGGATGGATTGCTCGAATTGCTGCACTACTTGTGGGGGAGGATCCAACAGAGTCTTATGCACTTATATGTGGAAACTGTCATATGCATAATGgtaagtggagtgaggacctcatccttacaaaatgtatttctgcttcaggattacttttgttcatcattacttt------tttcctccatgtcccctactgttaatt---------

upper sequence: GLYMA17G29620.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0033g01150.t01 (Vitis vinifera), 5'ss of exon 6
AACGATGGAGGATGGATTGCTCGAATTGCAGCATTGCTTGTGGGTGAGGATCCAACACAGTCTTATGCACTTATATGCGGTAACTGCCACATGCATAATGgtaagttggctgcatttgatgttctaggcttatgttcatacacaaagtaatagctacttatcatttctgaatacagtttaaattgtgtttttgtctacttgtttcctttcag
 | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| ||||| |||||||||| |  |    || |  | ||   |  |  |  |    |||  |  ||| |  || |||| |||  |      ||   || || |   |                   
TATGATGGGGGATGGATTGCTCGAATTGCAGCATTGCTTGTGGGTGAGGATCCAACACAGTCATATGCGCTCATATGCGGGAACTGCCATATGCACAATGgtaagtggagtagtattcacatccttaacccacctggacttccaac-tcttagtt--ttgtcatatcttcaggggtctttggtt-tggtgcag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5606130|gb|AI900228.1|AI900228
EST:     CCAACACAGTCTTATG-AGCTTATATGCGGTAACTGCCGCATGCATAATG                         GTCTTGCTCGGAAGGAGGATTTCCCATTTATTACTTATTACTGCCCACACT
genomic: CCAACACAGTCTTATGCA-CTTATATGCGGTAACTGCCACATGCATAATGgtaagttggc ... ttcctttcagGTCTTGCTCGGAAGGAGGATTTCCCATTTATTACTTATTACTGCCCACACT