Sequence
atgc intronic sequence ATGC exonic sequenceAAATTATGGACTTTGGTTACCCACAAAATCTTTCACCAGAGATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCATCCAAGgttagccagcaaacactgttgttgctagtagctaccatgaagtaagggcatagattggaacatcataggagaaaacagggagatattgatatgaccaaaa...
Basic information
species | Glycine max |
transcript | GLYMA17G16630.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 4
lower sequence: AT5G46630.1 (Arabidopsis thaliana), 5'ss of exon 4
AAATTATGGACTTTGGTTACCCACAAAATCTTTCACCAGAGATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCATCCAAGgttagccagcaaacact-gttgttgctagtagctaccatgaagtaagggcatagattggaacatcataggagaaaacagggagatattgatatgaccaaaa--------------------------------------------------------
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AGATTATGGACTTTGGCTATCCACAAAATCTCTCACCTGAAATTTTAAAACTTTATATCACTCAGGAAGGTGTACGGTCACCATTTTCATCGAAGgtaaa--ggcatctatttgtttgtgtatacaacag--attttgtaattgtgttggtgtgtggttcttcgaagttaagcagtatttcccgcaataaatagagattatgttgcttcttcactagatatgtttgcattcataagcttcttttcattacag
upper sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 4
lower sequence: PP1S54_156V6.1 (Physcomitrella patens), 5'ss of exon 4
AAATTATGGACTTTGGTTACCCACAAAATCTTTCACCAGAGATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCATCCAAGgtta----gccagcaaacactgttgttgctagtagct----accatgaagtaagggcataga--ttggaacatcataggag-----aaaacagggagatattgatatgaccaaaa----------------------------------------------------------------------------
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AGATTATGGATTTTGGGTATCCCCAAAACTTATCCCCAGAGATTTTGAAACTTTATATTACTCAAGAAGGTGTTCGTTCTCCATTTTCATCCAAGgtaacaggagttatatttaccttttatgcaggtttttgtacacgtcgtaatgagcgcatacacattgttttatcatccggatttgcgagtcttggcgacctggaaatgtgcgtaattcatgatttttgctgcatattctacgaagacatcaagggtctctgcatctgactgtttttgttgcattggaatag
upper sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 4
lower sequence: EFJ25669 (Selaginella moellendorffii), 5'ss of exon 4
AAATTATGGACTTTGGTTACCCACAAAATCTTTCACCAGAGATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCATCCAAGgttagccagcaaacactgttgttgctag-tagctaccatgaagtaagggcatagattggaacatcataggagaaaacagggagatattgatatgaccaaaa
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AGATCATGGACTTTGGATACCCGCAAAATCTTTCTCCTGAGATTTTGAAGCTCTATATAACTCAGGAGGGTGTTCGTTCGCCATTCTCG----AAGgtagcga---tgtgttgcattgcctggctggttaacagaatttatctttttccag---------------------------------------------
upper sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 4
lower sequence: EFJ22278 (Selaginella moellendorffii), 5'ss of exon 4
AAATTATGGACTTTGGTTACCCACAAAATCTTTCACCAGAGATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCATCCAAGgttagccagcaaacactgttgttgctag-tagctaccatgaagtaagggcatagattggaacatcataggagaaaacagggagatattgatatgaccaaaa
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AGATCATGGACTTTGGATACCCGCAAAATCTTTCTCCTGAGATTTTGAAGCTCTATATAACTCAGGAGGGTGTTCGTTCGCCATTCTCG----AAGgtagcga---tgtgttgcattgcctggctggttaacagaatttatctctttccag---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209699279|gb|BW670241.1|BW670241EST: TAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCATCCAAG CCCACAGATAGACCTGTTCCAAATGCAACTTTACAAGTTACTGGTGCTGTT
genomic: TAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCATCCAAGgttagccagc ... tgaataaaagCCCACAGATAGACCTGTTCCAAATGCAACTTTACAAGTTACTGGTGCTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATTATGGACTTTGGTTACCCACAAAATCTTTCACCAGAGATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCATCCAAGgttagccagcaaacactgttgttgctagtagctaccatgaagtaagggcatagattggaacatcataggagaaaacagggagatattgatatgaccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG