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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAAAAGGCAAGTTACAATGATGCTTGACCCTGTTCGTATATATGCAACAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTATgtaagtcaaaatgcatccgtcttttgttccttttattcaaacacaaaaagaacctttcttttaatagctcaatatctcattattttgtattaagcag

Basic information

species Glycine max
transcript GLYMA16G33260.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33260.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g35640.1 (Oryza sativa), 5'ss of exon 4
TCCTAAAAGGCAAGTTACAATGATGCTTGACCCTGTTCGTATATATGCAACAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTATgtaagtcaa-----aatgcatccgtcttttgttccttttat-tcaaacacaaaaagaacctttcttttaata-gctcaatatctcattattttgtattaagcag
||| ||||||||| ||   |||||||||||  |||| || ||||||||||| ||  ||||||||||||| || ||||| ||  |||| |||||||| | |||||| |||     |||  | | |   |   ||  |||| | |||  |   ||   ||    |  | ||||| ||| |||  |||  |||||| |||| | |||
TCCCAAAAGGCAATTTGACATGATGCTTGATTCTGTGCGGATATATGCAACTGCTGTATACATTGCAAGCATCATAATTGCTCTGTTCTGTGCTCTCTTTgtaagacaattttaaatttaacaggtgtaaattagttttgtatcatgcttcaatttaa----ttgtataatatgctaaatggctc--tattttttattta-cag

upper sequence: GLYMA16G33260.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G23550.1 (Arabidopsis thaliana), 5'ss of exon 4
TCCTAAAAGGCAAGTTACAATGATGCTTGACCCTGTTCGTATATATGCAACAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTATgtaagt--------------caaaatgc-atccgtcttttgttccttttattcaaacacaa---------aaagaacctttcttttaatagct-caatatctcattattttgtattaagcag
 ||  |  |||| || || |||||||||||||| | |||||| || || || ||  | ||  | ||||| || || || |||||||||||||||||||||||||||              |||||| |     |       || ||| | ||||   | ||          || |  | || ||  | ||  |  ||| | |||| || ||    |   |||
CCCACAGCGGCAGGTGACTATGATGCTTGACCCAGCTCGTATCTACGCTACTGCATTGTATCTAGCAAGCATTATCATTGCCTTGTTTTGTGCTCTTTATgtaagtggggtttctcaattcaaaatactggatgcacaacattgcttatgttcagttaaaactaggtagtgaaaatgccttgttggactaaatataatctgtcatcatctttc--tgtacag

upper sequence: GLYMA16G33260.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0130g00230.t01 (Vitis vinifera), 5'ss of exon 4
TCCTAAAAGGCAAGTTACAATGATGCTTGACCCTGTTCGTATATATGCAACAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTATgtaagtcaaaatgc--atccgtcttttgttccttttat-tcaaaca--caaaaagaacctt-tcttttaatagctcaatatctcattattttgtattaagcag---------
 || ||| ||||||| || ||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||     ||   ||   | | ||    || | || | ||| |  |  |    |||||  |||||  |  |||| | |   |  |||||  ||| |   |         
CCCAAAACGGCAAGTGACCATGATGCTTGACCCTGTTCGTATTTATGCAACAGCCATATACCTTGCAAGTATAATAATTGCCTTGTTTTGTGCTCTCTATgtaagttgccttgtggatatatgtatttccactgtcatcttaaatatccttattctaccttaccttttggtttctca-tgttggacaatttttcattgattggattgggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18692719|gb|BM521567.1|BM521567
EST:     CAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTAT                         GTTCATAACAAGTTACTGACATTTCTTGCAATTATTTTGGAGTTTGGGGCA
genomic: CAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTATgtaagtcaaa ... tattaagcagGTTCATAACAAGTTACTGACATTTCTTGCAATTATTTTGGAGTTTGGGGCA
EST: gi|192308015|gb|FG998998.1|FG998998
EST:     CAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTAT                         GTTCATAACAAGTTACTGACATTTCTTGCAATTATTTTGGAGTTTGGGGCA
genomic: CAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTATgtaagtcaaa ... tattaagcagGTTCATAACAAGTTACTGACATTTCTTGCAATTATTTTGGAGTTTGGGGCA
EST: gi|31311234|gb|CD396437.1|CD396437
EST:     CAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTAT                         GTTCATAACAAGTTACTGACATTTCTTGCAATTATTTTGGAGTTTGGGGCA
genomic: CAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTATgtaagtcaaa ... tattaagcagGTTCATAACAAGTTACTGACATTTCTTGCAATTATTTTGGAGTTTGGGGCA
EST: gi|192306357|gb|FG995123.1|FG995123
EST:     CAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTAT                         GTTCATAACAAGTTACTGACATTTCTTGCAATTATTTTGGAGTTTGGGGCA
genomic: CAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTATgtaagtcaaa ... tattaagcagGTTCATAACAAGTTACTGACATTTCTTGCAATTATTTTGGAGTTTGGGGCA
EST: gi|192308014|gb|FG998997.1|FG998997
EST:     CAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTAT                         GTTCATAACAAGTTACTGACATTTCTTGCAATTATTTTGGAGTTTGGGGCA
genomic: CAGCCATATACATTGCAAGTATGATAATCGCCTTGTTTTGTGCTCTTTATgtaagtcaaa ... tattaagcagGTTCATAACAAGTTACTGACATTTCTTGCAATTATTTTGGAGTTTGGGGCA