1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGAGTTGTTGCAGGTTCAGATGCTATTTGCTGCCAAATATGGGAAGGAATTTTTATCTGCTGCAACTGAGCTCAGGCCAGACTGTGGTGTTAATCGCCAGgttcatgaaattttcatgctatacaaccttttccttttcttttttgataaaacattttctacaaaaagccattttctcgtttgacattctccatgtaaatttcaattgcag
species | Glycine max |
transcript | GLYMA16G27420.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTT-ATCTGCTGCAACTGAGCTCAGGCTAGACTGTGGTGT-AATCGCCAG TTAATAGAGCTGCTTEST: gi|15338171|gb|BI498835.1|BI498835
genomic: TTTTATCTGCTGCAACTGAGCTCAGGCCAGACTGTGGTGTTAATCGCCAGgttcatgaaa ... tcaattgcagTTAATAGAGCTGCTT
EST: TTTTATCTGCTGCAACTGAGCTCAGGCCAGACTGTGGTGTTAATCGCCAG TTAATAGAGCTGCTTTCAATTCGTGCTCCTTCACCAGAAAAGAAACTGAACEST: gi|37994616|gb|CF806293.1|CF806293
genomic: TTTTATCTGCTGCAACTGAGCTCAGGCCAGACTGTGGTGTTAATCGCCAGgttcatgaaa ... tcaattgcagTTAATAGAGCTGCTTTCAATTCGTGCTCCTTCACCAGAAAAGAAACTGAAC
EST: TTTTATCTGCTGCAACTGAGCTCAGGCCAGACTGTGGTGTTAATCGCCAG TTAATAGAGCTGCTTTCAATTCGTGCTCCTTCACCAGAAAAGAAACTGAAC
genomic: TTTTATCTGCTGCAACTGAGCTCAGGCCAGACTGTGGTGTTAATCGCCAGgttcatgaaa ... tcaattgcagTTAATAGAGCTGCTTTCAATTCGTGCTCCTTCACCAGAAAAGAAACTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGTTGTTGCAGGTTCAGATGCTATTTGCTGCCAAATATGGGAAGGAATTTTTATCTGCTGCAACTGAGCTCAGGCCAGACTGTGGTGTTAATCGCCAGgttcatgaaattttcatgctatacaaccttttccttttcttttttgataaaacattttctacaaaaagccattttctcgtttgacattctccatgtaaatttcaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA