Sequence
atgc intronic sequence ATGC exonic sequenceATTTCATAAAATGGGGAGAGAAAAAGTTATTCTGATAGACTCAATACTGCCTTTTGGTTTCGAGCTGTTGATGTGTGATACTGACATGGTTTGGTTGAAGgtgatattcatttttacacatgctttctagagtcaatttgtttcaattatgaggatgattcgtaggcttggttagattttgattattgatctgaaagaag...
Basic information
species | Glycine max |
transcript | GLYMA16G20730.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G20730.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTTCATAAAATGGGGAGAGAAAAAGTTATTCTGATAGACTCAATACTGCCTTTTGGTTTCGAGCTGTTGATGTGTGATACTGACATGGTTTGGTTGAAGgtgatattcatttttacacatgctttctagagtcaatttgtttcaattatgaggatgattcgtaggcttggttagattttgattattgatctgaaagaag
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ATTCCACAAAATGGGAAGAGAAAAAGTTATTCTCATAGATTCTGTCTTGCCTTTTGGTTACGAGCTACTTATGTGTGACACTGACATGGTGTGGCTTAAGgtgctaat----tcgacagattattatcactgtta-ttcatcacg-ttat---cttccttaatagacttt-----cttctgataatttatatgtgacag-
upper sequence: GLYMA16G20730.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 4
ATTTCATAAAATGGGGAGAGAAAAAGTTATTCTGATAGACTCAATACTGCCTTTTGGTTTCGAGCTGTTGATGTGTGATACTGACATGGTTTGGTTGAAGgtgatattc-------atttttacac-atgctttctagagtcaatttgtttcaattatgaggatgattcgtaggcttggttagattttgattattgatctgaaagaag
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GTTTCATAAAATGGGGAGAGAAAAGGTTATCCTGATAGATGCTCTCTTGCCTTTTGGCTATGAGCTACTGATGTGTGACACAGACATGGTTTGGTTAAAGgtagtcttctgtgcctgttattggattgttcttttgagatcaaggtcttcttctttagctacataaatgttatcattatcattattattattatt-atttg-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298185080|gb|HO030293.1|HO030293EST: CTTTTGGTTTCGAGCTGTTGATGTGTGATACTGACATGGTTTGGTTGAAG AACCCACTTCCGTATCTTGCTCGTTATCCAGGAGCAGATGTTTTAACTTCA
genomic: CTTTTGGTTTCGAGCTGTTGATGTGTGATACTGACATGGTTTGGTTGAAGgtgatattca ... tgttaaacagAACCCACTTCCGTATCTTGCTCGTTATCCAGAAGCAGATGTTTTAACTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTCATAAAATGGGGAGAGAAAAAGTTATTCTGATAGACTCAATACTGCCTTTTGGTTTCGAGCTGTTGATGTGTGATACTGACATGGTTTGGTTGAAGgtgatattcatttttacacatgctttctagagtcaatttgtttcaattatgaggatgattcgtaggcttggttagattttgattattgatctgaaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG