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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctcatatattattagtagttaatcagtgatttgcagattcattttctcgatattattgcagtgttccaatatatgattatagtgtgaataacc...

Basic information

species Glycine max
transcript GLYMA16G13410.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565628|gb|BE475137.1|BE475137
EST:     GTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCAT
genomic: GTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCAT
EST: gi|254328508|gb|GR835473.1|GR835473
EST:     GTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAG-CTATCA
genomic: GTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAA-GGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCA
EST: gi|254328051|gb|GR835016.1|GR835016
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCAT
EST: gi|7795796|gb|AW781193.1|AW781193
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAAGAGGTTTTATTCTTAGATTATGAGATTGCCTTCAATGAG
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAG
EST: gi|254328509|gb|GR835474.1|GR835474
EST:     AGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTTCAATGAGGCTATCA
genomic: AGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCC-TTCAATGAGGCTATCA
EST: gi|254328052|gb|GR835017.1|GR835017
EST:     ATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGG-TTTA-TCTTAGATAATGAGATTGCCTTCAATGAGGCTATCAT
genomic: ATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctcatatattattagtagttaatcagtgatttgcagattcattttctcgatattattgcagtgttccaatatatgattatagtgtgaataacc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG