1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTTTGTGTGTTGTGGGATCTACGACAATTGTTTTGCATGCACCTCAAGAACGGGAAATTGAATCTGTTTCAGAAGTGTGGGATCTTGCTATGGAACCAGgtagtcatgttcctacttgatatatcagtgtctgtaatcaataggtattgtattgaacaactaaccaacaacataatcttttttctgcag
species | Glycine max |
transcript | GLYMA16G00560.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACGGGAAATTGAATCTGTTTCAGAGGTGTGGGATCTTGCTATGGAACCAG CATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCTEST: gi|120530522|gb|EH258655.1|EH258655
genomic: ACGGGAAATTGAATCTGTTTCAGAAGTGTGGGATCTTGCTATGGAACCAGgtagtcatgt ... ttttctgcagCATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCT
EST: ACGGGAAATTGAATCTGTTTCAGAAGTGTGGGATCTTGCTATGGAACCAG CATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCTEST: gi|120531881|gb|EH260014.1|EH260014
genomic: ACGGGAAATTGAATCTGTTTCAGAAGTGTGGGATCTTGCTATGGAACCAGgtagtcatgt ... ttttctgcagCATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCT
EST: TCTTGCTATGGAACCAG CA-TTCTC--TTATGCAGCTATGGTTATAACAGCTAC-TTTATCCTTATCT
genomic: TCTTGCTATGGAACCAGgtagtcatgt ... ttttctgcagCATTTCTCTTTTATGCAGCTATGGTTATAACAGCTACTTTTATCCTTATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGTGTGTTGTGGGATCTACGACAATTGTTTTGCATGCACCTCAAGAACGGGAAATTGAATCTGTTTCAGAAGTGTGGGATCTTGCTATGGAACCAGgtagtcatgttcctacttgatatatcagtgtctgtaatcaataggtattgtattgaacaactaaccaacaacataatcttttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT