Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGGATTCCTGGCATTGATATCCACTTGAACGATGGTGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAGgtcacattcatgctctatttgcattagtaattcttcttaatattgtaaagtattaaaaaaatctggtttcttttatgtggctcatttttctagtgttctatttatttatactgtatgcag

Basic information

species Glycine max
transcript GLYMA15G03320.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03320.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G43430.2 (Arabidopsis thaliana), 5'ss of exon 3
AAAAGGATTCCTGGCATTGATATCCACTTGAACGATGGTGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAGgtcacattcatgctctatttgcattagtaattcttcttaatattgtaaa-gtattaaaaaaatctggtttcttttatgtggctcatttttctagtgttctatttatttatactgtatgcag
 |  |||||||||| ||||| || |   |||| ||| ||||||||||||||||||||||||||||||| ||  || | ||||||||||| || || ||||||    |   |||  ||    |    ||||        |||| |   ||   ||  | | | ||   | |     | ||     |  ||  | |||    |  ||||  ||          
GATCGGATTCCTGGAATTGACATACTTCTGAAGGATAGTGATAAGTGGATGTTTGCTGGCCATGAGGTTCGGATACTTGACACTCCTGGCCATACACAAGgtt-tgtagctgccataacctctactgtaa--------aatactaagaacacatctatacagtcaaatattgccaacgttagaaacctt--tggtggatcacatattagta----------

upper sequence: GLYMA15G03320.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G31350.2 (Arabidopsis thaliana), 5'ss of exon 4
AAAAGGATTCCTGGCATTGATATCCACTTGAACGATGGTGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAGgtcacat-tcatgctc-tatttgcattagtaattcttctta-atattgtaaagtattaaaaaaatctggtttcttttatgtggctcatttttctagtgttctatttatttatactgtatgcag
 |  |||||||||| ||||||||   |||||| |||||||| || |||||||||||||||||||| || | ||| ||||| |||||||| |||||  |||||    | | || ||| ||||  | || | |  | |   |  || || |    |   |   ||  ||    | |  ||  |    || |||      |||                       
GACCGGATTCCTGGAATTGATATGGCCTTGAAGGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTCCATGTTATGGATACTCCTGGCCACACAAAAGgttgtttataattctcatattaacttttggagctttgaatgcatgttcttgcattccagttaagcctttgctttgctaaatattccactttaaagtagtt-----------------------

upper sequence: GLYMA15G03320.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G06130.2 (Arabidopsis thaliana), 5'ss of exon 4
AAAAGGATTCCTGGCATTGATATCCACTTGAACGATGGTGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAGgtcacattcatgctctatttgcattagtaattc-ttcttaatattgtaaagtattaaaaaaatctggtttcttttatgtggctcatttttctagtgttctatttatttatactgtatgcag
 |  |||||||||| |||||| |   |||||| |||| ||| || |||||||||||||||||||| || | | | ||||| |||||||| ||||||  ||||   || | |||  |  ||  ||   || ||  ||| |   | |||  ||| ||| | |  |||||||     ||    | |||   ||    | | | ||  ||               
GACCGGATTCCTGGAATTGATGTAGCCTTGAAAGATGCTGACAAATGGATGTTTGCTGGCCATGAAGTCCATATTATGGAAACTCCTGGCCACACCAGAGgttgaatacttgccat-cttaaatggatagtttattcctttcagtgtttagt-ttatatacttctggttcagacta----gttcaaagtttagttatccaatccat---------------

upper sequence: GLYMA15G03320.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0102g01180.t01 (Vitis vinifera), 5'ss of exon 6
AAAAGGATTCCTGGCATTGATATCCACTTGAACGATGGTGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAGgtcacattcatgctctatttgcattagtaattcttcttaatattgtaaagtattaaaaaaatctggtttcttttatgt-ggctcatttttctagtgttctatttatttatactgtatgcag
 |  | |||||||| ||||||||    ||||| ||||| || |||||||||||||| ||||||||||||  |||||| || ||||||||||| |||| |||||| |||    | ||| |   ||||| || | | ||  || | |||     ||  ||| || || |   ||  |  |   || ||      |||    |  ||                 
GATCGAATTCCTGGAATTGATATAGTTTTGAAAGATGGAGACAAGTGGATGTTTGCAGGCCATGAGGTGGTTGTAATTGAAACTCCTGGTCATACCCGAGgtcatatttcatcactaatcatattagaaaatat-ctggatttcgta---cttttgaaacatgtgatcatttcaaaatcaactgatgaaaacagtacatttctt-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296216|gb|FG989757.1|FG989757
EST:     GTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAA                         GCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACA
genomic: GTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAGgtcacattca ... ctgtatgcagGCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACA
EST: gi|208230511|gb|GE031216.1|GE031216
EST:     GTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAG                         GCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGNGACA
genomic: GTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAGgtcacattca ... ctgtatgcagGCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACA