Sequence
atgc intronic sequence ATGC exonic sequenceTAACGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTGTTGTTCCCAATCCTGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGgtattattttatgccgtgctaagaatgttatagaacactgatttgaaaaggatataaataagattaaatcacaccaaattacagaagtttcagcaatttc...
Basic information
species | Glycine max |
transcript | GLYMA14G10960.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G10960.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g39250.1 (Oryza sativa), 5'ss of exon 6
TAACGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTGTTGTTCCCAATCCTGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGgtattattttatgccgtgcta-agaatgttatagaacactgatttgaaaaggatataaataagattaaatcacaccaaattacagaagtttcagcaatttc
||| ||| | |||||||||||||| ||||| || ||| |||||||||| ||||||||||| |||| | | ||| || | || || || |||| |||||| | || | | | | ||||| | || | || || | | | | | | | |||| |||||||
TAAAGCACTAGTGAGACCTGGGCGCTTTGACCGGCATATTGTTGTTCCGAATCCTGATGTTGAAGGCCGGCGGCAAATCCTAGAGTCCCATATGTTGAAGgtaattcttgagaacttttggtatcatgtttgtccaggctaaaatggaatgtcttatagttatccttatacacatatgattacag----------------
upper sequence: GLYMA14G10960.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g39260.1 (Oryza sativa), 5'ss of exon 6
TAACGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTGTTGTTCCCAATCCTGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGgtattattttatgccgtgcta-agaatgttatagaacactgatttgaaaaggatataaataagattaaatcacaccaaattacagaagtttcagcaatttc
||| ||| | |||||||||||||| ||||| || ||| |||||||||| ||||| ||||| |||| | | ||| || | || || || |||||||||||| | || | | | | ||||| | ||| | || || | | | | | | | |||| ||||||
TAAAGCACTAGTGAGACCTGGGCGCTTTGACCGGCATATTGTTGTTCCAAATCCAGATGTTGAAGGCCGGCGGCAAATCCTAGAGTCCCATATGTCAAAGgtaattcttgagaacttttggtatcatgtttgtccagactaagatggaatgtcttatatttatccttatacacatatggttacag----------------
upper sequence: GLYMA14G10960.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G096764_T01 (Zea mays), 5'ss of exon 6
TAACGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTGTTGTTCCCAATCCTGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGgtattattttatgccgtgctaagaatgttatagaacactgatttgaaaaggatataaataagattaaatcacaccaaattacagaagtttcagcaatttc
||| || | | ||||||||||| ||||| |||||| ||||||||||||| || ||||| |||| ||| || || | ||||| || ||||||||||| | || | | || | | | | ||| || || | | || | ||| | ||
TAAAGCCCTAATCAGACCTGGGCGTTTTGACCGCCATATTGTTGTTCCCAACCCAGATGTTGAAGGTCGACGTCAAATCCTAGAATCCCATATGTCAAAGgtgattcttga----gaactcttgttcctgtg------ttattcaaatgaaatcgttttctcttaccgtcctatttgtttattgcag-------------
upper sequence: GLYMA14G10960.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0008g01170.t01 (Vitis vinifera), 5'ss of exon 6
TAACGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTGTTGTTCCCAATCCTGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGgtattattttatgccgtgctaagaatgttatagaacactgatttgaaaaggata-taaataagattaaatcaca-ccaaattacagaagtttcagcaatttc--------------------------------------------------------------------------------------
|| ||| ||||||||||||| ||||||||||| || ||||||| || ||||| |||||| |||| | ||||||| ||||||| || |||||||||||||| | | | | | || ||| ||| || | | | || | | | ||| | || |||| | | | | ||| | | ||
CAAGGCACTGGTGAGACCTGGTCGGTTTGATCGTCACATTGTTGTCCCTAATCCAGATGTAGAAGGGCGGAGGCAGATTATGGAATCCCATATGTCAAAGgtattgt--caccctctaccaaaaatttta-aggtgttttttgtacaatgaacactaagttggagtaaaaaagggctctacttttccagtcttgggaaggctttgcttgtgtgtctatttgcatggctgaccagtatcaaggttttgcttttccccttggcctaatgtatctaaatactattctacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8285572|gb|BE023131.1|BE023131EST: ATCCTGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAG GTTCTGAAGGCTGATGATGTTGATCTAATGATCATTGCCCGAGTAACACCT
genomic: ATCCTGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGgtattatttt ... tcaaatacagGTTCTGAAGGCTGATGATGTTGATCTAATGATCATTGCCCGAGTAACACCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAACGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTGTTGTTCCCAATCCTGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGgtattattttatgccgtgctaagaatgttatagaacactgatttgaaaaggatataaataagattaaatcacaccaaattacagaagtttcagcaatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagga