Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGAGCATGGCAGGAAAACCATATGGTTACCATAACATGATCTTCAGTTGGATAGACACTTTAAATGGAAACTATCCACCCCCCTTGGATGCTAATGTGgtattaatttaatcagttgttctgcttaaatttcaattcatttgttacattagattcaactatcttgagtttttgcactattatgccatgcttgagcatt...

Basic information

species Glycine max
transcript GLYMA14G02820.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02820.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0090g00100.t01 (Vitis vinifera), 5'ss of exon 4
ACTGAGCATGGCAGGAAAACCATATGGTTACCATAACATGATCTTCAGTTGGATAGACACTTTAAATGGAAACTATCCACCCCCCTTGGATGCTAATGTGgtattaatttaatcagttgttctgc---ttaaatttcaa--ttcatttgttacattagattcaactatcttgagtttttgcactattatgccatgcttgagcatt
||  ||||||| ||| ||||| |||||||||||||||||||| || || ||||||||  || |  ||| |||||||||||||||||| |||||| ||||||||||  |||  ||  |||||   |   ||||    |||  | || ||   |||  ||    || | | |      |||| | |||| |   |    ||      
ACGTAGCATGGAAGGCAAACCTTATGGTTACCATAACATGATATTTAGCTGGATAGATGCTCTGGATGAAAACTATCCACCCCCCTTAGATGCTCATGTGgtattgtttttctctattgtttctcaaattaagcaacaacatgcaattaaaacaagagtcagaaatgtttctcagatttggattatttttttaaaggtgc-----

upper sequence: GLYMA14G02820.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0090g00130.t01 (Vitis vinifera), 5'ss of exon 4
ACTGAGCATGGCAGGAAAACCATATGGTTACCATAACATGATCTTCAGTTGGATAGACACTTTAAATGGAAACTATCCACCCCCCTTGGATGCTAATGTGgtattaatttaatcagttgttc--tgcttaaatttcaattcatttgttacattagattcaactatcttgagtttttgcactattatgccatgcttgagcatt
||  ||||  | ||| ||||| |||||||||||||||||||| || || |||||||| ||| |  ||| |||||||||||||||||| |||||| ||||||||||  |||  ||  |||||   |  || | ||||     |  | |   ||     |  | | | |     ||||    |||      ||  || |  |  
ACGTAGCAGTGAAGGCAAACCTTATGGTTACCATAACATGATATTTAGCTGGATAGATACTCTGGATGAAAACTATCCACCCCCCTTAGATGCTCATGTGgtattgtttttttctattgttaaatatttcattttctggctacatctgcaatacaggtggattctatatttcttttcttttatctctatatctttcaaaa--

upper sequence: GLYMA14G02820.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ12449 (Selaginella moellendorffii), 5'ss of exon 4
ACTGAGCATGGCAGGAAAACCATATGGTTACCATAACATGATCTTCAGTTGGATAGACACTTTAAATGGAAACTATCCACCCCCCTTGGATGCTAATGTGgtattaatttaatcagttgttctgcttaaatttcaattcatttgttacattagattcaactatcttgagtttttgcactattatgccatgcttgagcatt
 | ||||||||  || || ||||||||||||||||||||||||||||| ||||| ||||||      |  |||||||| || |   ||||  | ||  |||||  |      |   ||     ||||     |  |  |||||  |   || |  |                                            
GCGGAGCATGGATGGCAAGCCATATGGTTACCATAACATGATCTTCAGCTGGATTGACACTCCGGTAGACAACTATCCTCCTCAGCTGGACTCAAACCTGgtaagagagctttagtttccaaagcttg----ttgacacattttctcggttgggatag------------------------------------------

upper sequence: GLYMA14G02820.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ34102 (Selaginella moellendorffii), 5'ss of exon 4
ACTGAGCATGGCAGGAAAACCATATGGTTACCATAACATGATCTTCAGTTGGATAGACACTTTAAATGGAAACTATCCACCCCCCTTGGATGCTAATGTGgtattaatttaatcagttgttctgcttaaattt--caattcatttgttacattagattcaactatcttgagtttttgcactattatgccatgcttgagcatt
 | ||||||||  || || ||||||||||||||||||||||||||||| ||||| ||||||      |  |||||||| || |   ||||  | ||  |||||  |      | ||||    | |  ||  ||    || ||| | ||   || |  |                                            
GCGGAGCATGGATGGCAAGCCATATGGTTACCATAACATGATCTTCAGCTGGATTGACACTCCGGTAGACAACTATCCTCCTCAGCTGGACTCAAACCTGgtaagagagct-ttagtttcctttccaaagcttgttgatacatgttttcggttgggatag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493627|gb|EH221794.1|EH221794
EST:     TTTAAATGGAAACTATCCACCCCCCTTGGATGCTAATGTG                         GTTGCTTGCGTTATGACAATTTGGAGTCAACTTCAACCTGAATATGCAGCA
genomic: TTTAAATGGAAACTATCCACCCCCCTTGGATGCTAATGTGgtattaattt ... tgctctgcagGTTGCTTGCGTTATGACAATTTGGAGTCAACTTCAACCTGAATATGCAGCA
EST: gi|37996930|gb|CF808519.1|CF808519
EST:     GGATAGACACTTTAAATGGAAACTATCCACCCCCCTTGGATGCTAATGTG                         GTTGCTTGCGTTATGACAATTTGGAGTCAACTTCAACCTGAATATGCAGCA
genomic: GGATAGACACTTTAAATGGAAACTATCCACCCCCCTTGGATGCTAATGTGgtattaattt ... tgctctgcagGTTGCTTGCGTTATGACAATTTGGAGTCAACTTCAACCTGAATATGCAGCA